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The map label for this gene is ygbT [H]

Identifier: 220904201

GI number: 220904201

Start: 1082536

End: 1083447

Strand: Direct

Name: ygbT [H]

Synonym: Ddes_0928

Alternate gene names: 220904201

Gene position: 1082536-1083447 (Clockwise)

Preceding gene: 220904200

Following gene: 220904202

Centisome position: 37.67

GC content: 53.51

Gene sequence:

>912_bases
ATGCGCCTGATGTCTGAAACCGTGCCTCTTAAAGAAAGAAACTCCATGCTCTTTCTCAAGTATGGGCGCATTGATGTTGA
GGACGGGGCATTTGTATTGGTAGACGCAACGGGCGTGCGTATGCAGATTCCCGTAGGTGGCGTTGCGTGCCTTTTTCTTG
AACCGGGTACGACGGTAACTCACGCTGCTCTGGCCTTGGCAGCAGATTGCGGCACCTTGATGGTATGGGTCGGCGAGGGC
GGCGTGCGTTTATACTCCGCCGGACAACCGGGCGGCGCACGGGCTGACCGTTTGCTGTATCAAGCCCGTCTTGCACTGGA
TGATGAACTGCGCCTCAGGGTGGTTCGGGCCATGTACAGAATGCGTTTCAATGAGGAACCGCCACAACGACGGAGCATTG
AACAGTTACGGGGTGTAGAGGGCGCAAGAGTTCGCGCCTTATATAAATTCCTGGCTGCACAGTATAAGGTGACATGGGGG
AAACGGTCTTATGACCCCAGGGAATGGGATGCCACTGATGTGGTGAACAAGGCCGTCAGCGTTGCCTGCCATTGCCTGTA
TGGAATCTGCGAGGCCGCTGTGCTCGCGGCGGGATATGCACCTGCCATCGGATTTATTCATTCGGGTAAACCGCTTTCTT
TTGTATATGATGTTGCCGATCTGTTCAAATTTGAAACTGCAATCCCTGCTGCATTGTCTGTGGTGGCTAAAAAGCCAGGC
AAGGTTGAAAGCGAGGTACGTTTGCGTTGTCGCGATCTTTTTAGAGAAACGCGGTTGCTGCAAAAAATCATTCCAGCCAT
TGAAGAAGTGCTTTCTGCCGGAGGAATCGCCAAGCCAGAACGTCCCCCCGAGGCAGTGCCCATAGCCATTCCCAACAAAA
AGGGGCTTGGTGATGCTGGTCATCGTAACTGA

Upstream 100 bases:

>100_bases
CGCCGGTTTGCTCCCCGACGTGTCCTGCGGGTGCGCGCACGGGTGCATGGCGTACAGCGTGAAGATGTAGAAGAAAAACA
GCAACAGGCGGTAATGACTG

Downstream 100 bases:

>100_bases
AGCAGTGCCGCAGCGCTTGCGTGGGTATTTGTCACGCTGGTTGCTGGAAGTTCGGGCAGGCGTGTATGTGGGCAATTACT
CAGTCCGTGTGCGGCAAAAA

Product: CRISPR-associated protein Cas1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRLMSETVPLKERNSMLFLKYGRIDVEDGAFVLVDATGVRMQIPVGGVACLFLEPGTTVTHAALALAADCGTLMVWVGEG
GVRLYSAGQPGGARADRLLYQARLALDDELRLRVVRAMYRMRFNEEPPQRRSIEQLRGVEGARVRALYKFLAAQYKVTWG
KRSYDPREWDATDVVNKAVSVACHCLYGICEAAVLAAGYAPAIGFIHSGKPLSFVYDVADLFKFETAIPAALSVVAKKPG
KVESEVRLRCRDLFRETRLLQKIIPAIEEVLSAGGIAKPERPPEAVPIAIPNKKGLGDAGHRN

Sequences:

>Translated_303_residues
MRLMSETVPLKERNSMLFLKYGRIDVEDGAFVLVDATGVRMQIPVGGVACLFLEPGTTVTHAALALAADCGTLMVWVGEG
GVRLYSAGQPGGARADRLLYQARLALDDELRLRVVRAMYRMRFNEEPPQRRSIEQLRGVEGARVRALYKFLAAQYKVTWG
KRSYDPREWDATDVVNKAVSVACHCLYGICEAAVLAAGYAPAIGFIHSGKPLSFVYDVADLFKFETAIPAALSVVAKKPG
KVESEVRLRCRDLFRETRLLQKIIPAIEEVLSAGGIAKPERPPEAVPIAIPNKKGLGDAGHRN
>Mature_303_residues
MRLMSETVPLKERNSMLFLKYGRIDVEDGAFVLVDATGVRMQIPVGGVACLFLEPGTTVTHAALALAADCGTLMVWVGEG
GVRLYSAGQPGGARADRLLYQARLALDDELRLRVVRAMYRMRFNEEPPQRRSIEQLRGVEGARVRALYKFLAAQYKVTWG
KRSYDPREWDATDVVNKAVSVACHCLYGICEAAVLAAGYAPAIGFIHSGKPLSFVYDVADLFKFETAIPAALSVVAKKPG
KVESEVRLRCRDLFRETRLLQKIIPAIEEVLSAGGIAKPERPPEAVPIAIPNKKGLGDAGHRN

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=296, Percent_Identity=62.1621621621622, Blast_Score=404, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 33225; Mature: 33225

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLMSETVPLKERNSMLFLKYGRIDVEDGAFVLVDATGVRMQIPVGGVACLFLEPGTTVT
CCCCCCCCCCCCCCCEEEEEECEEEECCCCEEEEECCCEEEEECCCCEEEEEECCCCHHH
HAALALAADCGTLMVWVGEGGVRLYSAGQPGGARADRLLYQARLALDDELRLRVVRAMYR
HHHHHHHHCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
MRFNEEPPQRRSIEQLRGVEGARVRALYKFLAAQYKVTWGKRSYDPREWDATDVVNKAVS
HHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHH
VACHCLYGICEAAVLAAGYAPAIGFIHSGKPLSFVYDVADLFKFETAIPAALSVVAKKPG
HHHHHHHHHHHHHHHHCCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KVESEVRLRCRDLFRETRLLQKIIPAIEEVLSAGGIAKPERPPEAVPIAIPNKKGLGDAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCC
HRN
CCC
>Mature Secondary Structure
MRLMSETVPLKERNSMLFLKYGRIDVEDGAFVLVDATGVRMQIPVGGVACLFLEPGTTVT
CCCCCCCCCCCCCCCEEEEEECEEEECCCCEEEEECCCEEEEECCCCEEEEEECCCCHHH
HAALALAADCGTLMVWVGEGGVRLYSAGQPGGARADRLLYQARLALDDELRLRVVRAMYR
HHHHHHHHCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
MRFNEEPPQRRSIEQLRGVEGARVRALYKFLAAQYKVTWGKRSYDPREWDATDVVNKAVS
HHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHH
VACHCLYGICEAAVLAAGYAPAIGFIHSGKPLSFVYDVADLFKFETAIPAALSVVAKKPG
HHHHHHHHHHHHHHHHCCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KVESEVRLRCRDLFRETRLLQKIIPAIEEVLSAGGIAKPERPPEAVPIAIPNKKGLGDAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCC
HRN
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]