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The map label for this gene is rrf2 [H]

Identifier: 220904115

GI number: 220904115

Start: 988727

End: 989143

Strand: Reverse

Name: rrf2 [H]

Synonym: Ddes_0842

Alternate gene names: 220904115

Gene position: 989143-988727 (Counterclockwise)

Preceding gene: 220904118

Following gene: 220904114

Centisome position: 34.42

GC content: 52.04

Gene sequence:

>417_bases
ATGAAGCTTTCAGCCAAAACACGATACGCTGCCCGTATATTGCTCTATCTGGCAAAGAACGGACTTGAGAAACCAGTTTC
CTCAAGCATGCTGGCAAGCCAGACCGGTATCAGTTCCCAATTCATTGAACAAATCCTCCGTCAGTTGCGACTGGCGGGGA
TTACGGGCAGTGTGCGTGGGGCCAAAGGCGGCCACGTACTGCTACGCAAACCCGAAGAACTGACCTTTGGCTGTATTGTA
AACCTGATGGAAGGGGGCATCGAATTGAGTGGCTGCCTGGAAAAACCCGGCCACTGTTCACGCTTTGATGCCTGTGAAGT
GCGCAAGGCATGGGAAAGCCTGCAATCGACGCTGGACGGAGTTTTTGAATCCATCACCCTGCGCGACCTCATGCACGACG
ATCATATTTTGCTTTAA

Upstream 100 bases:

>100_bases
TCAAATTATGCTTTGGAAACTCAAACTTCCAACACAGTGTGATACGGCCATTGGCCGATTTTATATCCCCATTTTATTAC
TGCGCCGTGGGGGGTTCGCA

Downstream 100 bases:

>100_bases
AACATTATATCCAGTAGCGGCGGACGACCCCACGCAATCTGTTCTTTCAGGGGCAGGACTCAACGGTGCGGCGTCCGCCT
TATCTGGATTTAGTTCTTTC

Product: BadM/Rrf2 family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKLSAKTRYAARILLYLAKNGLEKPVSSSMLASQTGISSQFIEQILRQLRLAGITGSVRGAKGGHVLLRKPEELTFGCIV
NLMEGGIELSGCLEKPGHCSRFDACEVRKAWESLQSTLDGVFESITLRDLMHDDHILL

Sequences:

>Translated_138_residues
MKLSAKTRYAARILLYLAKNGLEKPVSSSMLASQTGISSQFIEQILRQLRLAGITGSVRGAKGGHVLLRKPEELTFGCIV
NLMEGGIELSGCLEKPGHCSRFDACEVRKAWESLQSTLDGVFESITLRDLMHDDHILL
>Mature_138_residues
MKLSAKTRYAARILLYLAKNGLEKPVSSSMLASQTGISSQFIEQILRQLRLAGITGSVRGAKGGHVLLRKPEELTFGCIV
NLMEGGIELSGCLEKPGHCSRFDACEVRKAWESLQSTLDGVFESITLRDLMHDDHILL

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788880, Length=137, Percent_Identity=29.1970802919708, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 15173; Mature: 15173

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSAKTRYAARILLYLAKNGLEKPVSSSMLASQTGISSQFIEQILRQLRLAGITGSVRG
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
AKGGHVLLRKPEELTFGCIVNLMEGGIELSGCLEKPGHCSRFDACEVRKAWESLQSTLDG
CCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VFESITLRDLMHDDHILL
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKLSAKTRYAARILLYLAKNGLEKPVSSSMLASQTGISSQFIEQILRQLRLAGITGSVRG
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
AKGGHVLLRKPEELTFGCIVNLMEGGIELSGCLEKPGHCSRFDACEVRKAWESLQSTLDG
CCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VFESITLRDLMHDDHILL
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8335628 [H]