| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is pstS [H]
Identifier: 220904055
GI number: 220904055
Start: 915507
End: 916343
Strand: Direct
Name: pstS [H]
Synonym: Ddes_0781
Alternate gene names: 220904055
Gene position: 915507-916343 (Clockwise)
Preceding gene: 220904054
Following gene: 220904056
Centisome position: 31.86
GC content: 57.35
Gene sequence:
>837_bases ATGAAACGTATAATTCTTGCGGCTGTTCTGCTTATGTGCGGCCTCGGCACGGCCTTTGCTGCCTCGCCTTCCGCCCCTCT GGATGCATTCAGGGGGCAGAAGGGAGTTGTGGATATTGCGGGAGGTACGGCCCACATTCCTGTTATGAAAGAGGCCGCCA GGCAGATCATGGCCGTTAACCCGGACGTACGCATTACTGTGGCAGGGGGCGGCTCCGGCGTGGGTGTGCAGAAAGTGGGC GAGGGCATTGTGCAGATCGGCAATACCGGCCGCGCCCTCAAACCTGCGGAAGTGGAAAAATACGGTCTTGTGACCTTTCC ATTTGCCATTGACGGCGTGGCTGTGGCTGTCAATCCGGCCAACAGGGTCACGGGGCTGACCAAAGCCCAGATAAAGGATG TTTTTTCCGGCAAAATAGCCAACTGGAAGGAAGTGGGCGGTGCTGACGCTCCCATATCTCTCTATGTGCGCGAAGACGGC AGCGGCACGCGCGAAACGTTTGAAGAACGCGCCCTGGACAAAGGCGTCGCAGCGTCCAAAGCCAACGTGGTCAGTTCCAA CGGGGCCATGAAAACAGCTGTCAGCCAGGATCCCAACGCCATCGGCTATGTGGGCATCGGCCATCTGGACAACAGCATCA AGGGCATAAGCATTGACGGTGCCACTCCCAGTCAGGAAAACGCCGCTTCAGGCGAGTACAAGGTTACGCGCCTTCTGTAC ATGAACACCAAGGGCGAACCGCAAGGCCTGACCAAGGCCTTTGTGGAATATATCTTCACTCCCGCCGGGCAGGATATCGT ATCCGGTGCCGGCTACATCCCCTATGTCAAGAAATAG
Upstream 100 bases:
>100_bases TCCATCTTCTACCTGACTCCCGGCGATGTAATCGCGTCTGTTGCTGTTCACTGCGTGGCGCGTCCGCGCTTTCTGTTCAC GCTAACCGTAGGAGACTGTC
Downstream 100 bases:
>100_bases GAATCGCTCCGCCCGCCAGGCCGGGGGCGCTGCGGTGCTTCCGGCTGCGGGCCGCCATATGCGGGATAATACCGACAGCC CCGGCCGCCTTCTGCTGCTG
Product: phosphate binding protein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: PBP [H]
Number of amino acids: Translated: 278; Mature: 278
Protein sequence:
>278_residues MKRIILAAVLLMCGLGTAFAASPSAPLDAFRGQKGVVDIAGGTAHIPVMKEAARQIMAVNPDVRITVAGGGSGVGVQKVG EGIVQIGNTGRALKPAEVEKYGLVTFPFAIDGVAVAVNPANRVTGLTKAQIKDVFSGKIANWKEVGGADAPISLYVREDG SGTRETFEERALDKGVAASKANVVSSNGAMKTAVSQDPNAIGYVGIGHLDNSIKGISIDGATPSQENAASGEYKVTRLLY MNTKGEPQGLTKAFVEYIFTPAGQDIVSGAGYIPYVKK
Sequences:
>Translated_278_residues MKRIILAAVLLMCGLGTAFAASPSAPLDAFRGQKGVVDIAGGTAHIPVMKEAARQIMAVNPDVRITVAGGGSGVGVQKVG EGIVQIGNTGRALKPAEVEKYGLVTFPFAIDGVAVAVNPANRVTGLTKAQIKDVFSGKIANWKEVGGADAPISLYVREDG SGTRETFEERALDKGVAASKANVVSSNGAMKTAVSQDPNAIGYVGIGHLDNSIKGISIDGATPSQENAASGEYKVTRLLY MNTKGEPQGLTKAFVEYIFTPAGQDIVSGAGYIPYVKK >Mature_278_residues MKRIILAAVLLMCGLGTAFAASPSAPLDAFRGQKGVVDIAGGTAHIPVMKEAARQIMAVNPDVRITVAGGGSGVGVQKVG EGIVQIGNTGRALKPAEVEKYGLVTFPFAIDGVAVAVNPANRVTGLTKAQIKDVFSGKIANWKEVGGADAPISLYVREDG SGTRETFEERALDKGVAASKANVVSSNGAMKTAVSQDPNAIGYVGIGHLDNSIKGISIDGATPSQENAASGEYKVTRLLY MNTKGEPQGLTKAFVEYIFTPAGQDIVSGAGYIPYVKK
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 - InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 28737; Mature: 28737
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRIILAAVLLMCGLGTAFAASPSAPLDAFRGQKGVVDIAGGTAHIPVMKEAARQIMAVN CHHHHHHHHHHHHCCCHHHCCCCCCCHHHHCCCCCEEEECCCCEECHHHHHHHHHHEEEC PDVRITVAGGGSGVGVQKVGEGIVQIGNTGRALKPAEVEKYGLVTFPFAIDGVAVAVNPA CCEEEEEECCCCCCCHHHHCCHHEEECCCCCCCCCCCHHHCCEEEECEEECCEEEEECCH NRVTGLTKAQIKDVFSGKIANWKEVGGADAPISLYVREDGSGTRETFEERALDKGVAASK HHHCCCHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCC ANVVSSNGAMKTAVSQDPNAIGYVGIGHLDNSIKGISIDGATPSQENAASGEYKVTRLLY CEEEECCCCEEEECCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEE MNTKGEPQGLTKAFVEYIFTPAGQDIVSGAGYIPYVKK ECCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCC >Mature Secondary Structure MKRIILAAVLLMCGLGTAFAASPSAPLDAFRGQKGVVDIAGGTAHIPVMKEAARQIMAVN CHHHHHHHHHHHHCCCHHHCCCCCCCHHHHCCCCCEEEECCCCEECHHHHHHHHHHEEEC PDVRITVAGGGSGVGVQKVGEGIVQIGNTGRALKPAEVEKYGLVTFPFAIDGVAVAVNPA CCEEEEEECCCCCCCHHHHCCHHEEECCCCCCCCCCCHHHCCEEEECEEECCEEEEECCH NRVTGLTKAQIKDVFSGKIANWKEVGGADAPISLYVREDGSGTRETFEERALDKGVAASK HHHCCCHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCC ANVVSSNGAMKTAVSQDPNAIGYVGIGHLDNSIKGISIDGATPSQENAASGEYKVTRLLY CEEEECCCCEEEECCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEE MNTKGEPQGLTKAFVEYIFTPAGQDIVSGAGYIPYVKK ECCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8760913; 8969508; 9384377 [H]