Click here to switch to the map view.

The map label for this gene is sodC [H]

Identifier: 220903815

GI number: 220903815

Start: 648471

End: 649007

Strand: Direct

Name: sodC [H]

Synonym: Ddes_0538

Alternate gene names: 220903815

Gene position: 648471-649007 (Clockwise)

Preceding gene: 220903808

Following gene: 220903816

Centisome position: 22.57

GC content: 59.78

Gene sequence:

>537_bases
ATGAAAAAAATTCTGCTGGCCTTGAGCTTTGTGTGTTGCGCCCTCTGGATCGGCGCCGGTGTCGCCCAGGCGGACAGCGT
TAAGGTTCCCGTCAATAAAATCACTGATGAAGGCGTGGGCGAGGCCATCGGCTTCATCACCTTTGCCGACGATGGCAAGG
GCGGAGTAGACGTTCTTGTTGATGTCATAGGCATAAGCGAGGGCGAGCACGGCATGCATGTGCACGAAAATCCCTCCTGC
GCCCCTGCTGAAAAAGACGGCAAAAAAGTTGCCGGCCTGGCTGCGGGCGGACACTTTGACCCCGATAAAACCGGCAGGCA
CGAAGGCCCCGGCAAACACGGACACAAGGGCGACCTGCCCGCCATTAATGCCGATGCCAAGGGCGCTGTCAGCGCCAAGC
TGCATGCTCCCAATCTGAGCGTCAAGGATCTCAAGGGCCGTTCCATCATGATCCATGCCGGCGGCGACAATTACTCCGAC
CAGCCCGCTCCCCTGGGCGGCGGTGGAGCGCGCATTGCCTGCGGCGTGATCGAATAG

Upstream 100 bases:

>100_bases
GGATGCGTTGACCGCATTCTTTTGATGATATAGGTTATCAGTACGGTTTCATGGCGGGCGGGCTTTTCGCCTCGTGCGCC
GTAACGAAAGGAGACTGCTT

Downstream 100 bases:

>100_bases
GCGGACATTCCGTCCTTCCAGACAGACGAATCCTCTCCTGGCATACAAGCCCCGTCGCGATCCAGGCGGCGGGGCTTTTC
CATGCTGTCCTCATTGGCTA

Product: copper/zinc binding superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MKKILLALSFVCCALWIGAGVAQADSVKVPVNKITDEGVGEAIGFITFADDGKGGVDVLVDVIGISEGEHGMHVHENPSC
APAEKDGKKVAGLAAGGHFDPDKTGRHEGPGKHGHKGDLPAINADAKGAVSAKLHAPNLSVKDLKGRSIMIHAGGDNYSD
QPAPLGGGGARIACGVIE

Sequences:

>Translated_178_residues
MKKILLALSFVCCALWIGAGVAQADSVKVPVNKITDEGVGEAIGFITFADDGKGGVDVLVDVIGISEGEHGMHVHENPSC
APAEKDGKKVAGLAAGGHFDPDKTGRHEGPGKHGHKGDLPAINADAKGAVSAKLHAPNLSVKDLKGRSIMIHAGGDNYSD
QPAPLGGGGARIACGVIE
>Mature_178_residues
MKKILLALSFVCCALWIGAGVAQADSVKVPVNKITDEGVGEAIGFITFADDGKGGVDVLVDVIGISEGEHGMHVHENPSC
APAEKDGKKVAGLAAGGHFDPDKTGRHEGPGKHGHKGDLPAINADAKGAVSAKLHAPNLSVKDLKGRSIMIHAGGDNYSD
QPAPLGGGGARIACGVIE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=179, Percent_Identity=48.0446927374302, Blast_Score=154, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 18041; Mature: 18041

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILLALSFVCCALWIGAGVAQADSVKVPVNKITDEGVGEAIGFITFADDGKGGVDVLV
CHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHCCCCCCCCEEEEEEEECCCCCCHHEEE
DVIGISEGEHGMHVHENPSCAPAEKDGKKVAGLAAGGHFDPDKTGRHEGPGKHGHKGDLP
EEECCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
AINADAKGAVSAKLHAPNLSVKDLKGRSIMIHAGGDNYSDQPAPLGGGGARIACGVIE
EECCCCCCCEEEEEECCCCCCEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MKKILLALSFVCCALWIGAGVAQADSVKVPVNKITDEGVGEAIGFITFADDGKGGVDVLV
CHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHCCCCCCCCEEEEEEEECCCCCCHHEEE
DVIGISEGEHGMHVHENPSCAPAEKDGKKVAGLAAGGHFDPDKTGRHEGPGKHGHKGDLP
EEECCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
AINADAKGAVSAKLHAPNLSVKDLKGRSIMIHAGGDNYSDQPAPLGGGGARIACGVIE
EECCCCCCCEEEEEECCCCCCEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]