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The map label for this gene is psd

Identifier: 220903780

GI number: 220903780

Start: 610151

End: 610798

Strand: Direct

Name: psd

Synonym: Ddes_0503

Alternate gene names: 220903780

Gene position: 610151-610798 (Clockwise)

Preceding gene: 220903774

Following gene: 220903781

Centisome position: 21.23

GC content: 58.02

Gene sequence:

>648_bases
ATGCGTCCCGCCCATTGCGGAATTACCCCCGAAGGATGGCCCTGCATCGGCCTTACCGGGTTTTCGGCTCTTGTTTTTGC
CGCCCTTGGCTGGTGGCCCCTGGCTCTTGTTTTTCTGGTCCTGTGCTGGTTCAGCATGCATTTTTTCCGCGATCCCGAAC
GCGTTACCCCTCGGGGTGAAGGGCTGGCCATCAGCCCTGCCGATGGAAAAATCATCCGCATTGAAGAAAAAGCTGATCCT
TTCAGCGGCGAAAAACGCCTGTGCATCAGCATTTTCATGAACGTGTTCAGCGTGCATGTGAACCGTTCGCCCGTCGCCGG
AACGGTGGAGGATATCCGCTATTTCCCCGGTGCCTTTGTCAATGCCGCCTTTGACAAGGCCGCCACCGACAACGAACGCT
GCGCTTACAGCCTGCGCGATGCTGACGGCAAGCTGTGGAGCATGGTGCAGATTGCAGGGCTTGTGGCCCGGCGTATTGTC
TGCCGCACGGACGTGGGCGATGCCCTTGAACGCGGGCAGAGGTACGGCATGATACGTTTTGGGTCACGTGTTGACCTTTA
CCTGCCTGAAGGATATGTTGCGGCTGCGCAGTTGGGGCAGCAGGTTTTTGCCGGGCAATGTGTTGTTGCCCGTGCAAGGC
AAAGCTAG

Upstream 100 bases:

>100_bases
CTTTTTTACTTCCGCTTGCCATGCGGTCCACATCAGTCTATGGTATTGCATTGATTGCGCAACAGCGCGGCCCGGCCGCG
CATTACGTACAGGAGATGCC

Downstream 100 bases:

>100_bases
CCTTTTTCGGCGCTTAACGGCCCCGGGCCATAACTTGGTGAAGTATGACCACAGAAGTCAAAAAGCCGCGCAAGGGAGTT
TACCTCCTGCCGAACATGAT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MRPAHCGITPEGWPCIGLTGFSALVFAALGWWPLALVFLVLCWFSMHFFRDPERVTPRGEGLAISPADGKIIRIEEKADP
FSGEKRLCISIFMNVFSVHVNRSPVAGTVEDIRYFPGAFVNAAFDKAATDNERCAYSLRDADGKLWSMVQIAGLVARRIV
CRTDVGDALERGQRYGMIRFGSRVDLYLPEGYVAAAQLGQQVFAGQCVVARARQS

Sequences:

>Translated_215_residues
MRPAHCGITPEGWPCIGLTGFSALVFAALGWWPLALVFLVLCWFSMHFFRDPERVTPRGEGLAISPADGKIIRIEEKADP
FSGEKRLCISIFMNVFSVHVNRSPVAGTVEDIRYFPGAFVNAAFDKAATDNERCAYSLRDADGKLWSMVQIAGLVARRIV
CRTDVGDALERGQRYGMIRFGSRVDLYLPEGYVAAAQLGQQVFAGQCVVARARQS
>Mature_215_residues
MRPAHCGITPEGWPCIGLTGFSALVFAALGWWPLALVFLVLCWFSMHFFRDPERVTPRGEGLAISPADGKIIRIEEKADP
FSGEKRLCISIFMNVFSVHVNRSPVAGTVEDIRYFPGAFVNAAFDKAATDNERCAYSLRDADGKLWSMVQIAGLVARRIV
CRTDVGDALERGQRYGMIRFGSRVDLYLPEGYVAAAQLGQQVFAGQCVVARARQS

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_DESDA (B8J4F6)

Other databases:

- EMBL:   CP001358
- RefSeq:   YP_002479092.1
- GeneID:   7284170
- GenomeReviews:   CP001358_GR
- KEGG:   dds:Ddes_0503
- HOGENOM:   HBG541103
- ProtClustDB:   PRK05305
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 23737; Mature: 23737

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPAHCGITPEGWPCIGLTGFSALVFAALGWWPLALVFLVLCWFSMHFFRDPERVTPRGE
CCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GLAISPADGKIIRIEEKADPFSGEKRLCISIFMNVFSVHVNRSPVAGTVEDIRYFPGAFV
CEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHH
NAAFDKAATDNERCAYSLRDADGKLWSMVQIAGLVARRIVCRTDVGDALERGQRYGMIRF
HHHHHHCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEE
GSRVDLYLPEGYVAAAQLGQQVFAGQCVVARARQS
CCEEEEECCCCHHHHHHHHHHHHHCHHHHHHCCCC
>Mature Secondary Structure
MRPAHCGITPEGWPCIGLTGFSALVFAALGWWPLALVFLVLCWFSMHFFRDPERVTPRGE
CCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GLAISPADGKIIRIEEKADPFSGEKRLCISIFMNVFSVHVNRSPVAGTVEDIRYFPGAFV
CEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHH
NAAFDKAATDNERCAYSLRDADGKLWSMVQIAGLVARRIVCRTDVGDALERGQRYGMIRF
HHHHHHCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEE
GSRVDLYLPEGYVAAAQLGQQVFAGQCVVARARQS
CCEEEEECCCCHHHHHHHHHHHHHCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA