| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is livF [H]
Identifier: 220903754
GI number: 220903754
Start: 584190
End: 584900
Strand: Direct
Name: livF [H]
Synonym: Ddes_0476
Alternate gene names: 220903754
Gene position: 584190-584900 (Clockwise)
Preceding gene: 220903753
Following gene: 220903760
Centisome position: 20.33
GC content: 61.04
Gene sequence:
>711_bases ATGTGCCTGTTGCAACTTTCTGACATACGGGTGAGCTACGGCAGCGTCGAGGTGCTGCACGGCATCAACCTGCGGGTGGA AGAGGGCGAGATAGTCACCATCCTCGGTGCTAACGGCGCGGGCAAAAGCACCACCCTGCTGTCCATCAGCGGGCTTGTGC GGCCTACTTCGGGCGAGATTCTTTTTGAAGGGCAAAACCTTCTGCGGCTGCCGAGCCACAAGGTGGTGGGGCTGGGTATT GCCCAGTCGCCCGAGGGGCGGCGCGTTTTTGGCGTTATGAGCGTGCTTGAGAATCTGCGATTGGGCGCTTTCTGCATTGA AGACAAGGCTCGCAGTGAGCGCACCCTGGAATGGATATTCGATCTTTTTCCGCGGCTGCTTGAGCGCAAAGACCAGCTTG CGGGCACGCTTTCGGGCGGCGAACAGCAGATGCTGGCCATTGGCCGCGCCTTGATGGCCGAGCCGCGCCTTTTGCTGCTT GATGAGCCTTCGCTGGGCCTGGCCCCGCTTTTGGTGCGTTCCATCTTTGAGACCGTGCGGGCCATCAACAAGCGCGGCGT CACCGTGCTGCTGGTGGAACAGAACGCACGTGCGGCCCTCAAGCTGGCTTCGCGCGGCTATGTGCTGGAAGTGGGCAACG TGGTTATGGAAGACAAGGCCCAGAGCCTGCTGAACAATGCCAGCGTGCGGGAAGCCTATCTGGGCGGGTAG
Upstream 100 bases:
>100_bases GCACGGCACCATGATAGCCCAGGGCGAGCCGGAGGCCGTGCGCCGGAATCCGGCCGTGGTGGAAGCCTACCTGGGCGTAG AAGACGAGAAGTGGTAAGCC
Downstream 100 bases:
>100_bases AGCATTCACACTTGAAATGCCTACAAGGATTTGCCTGTAACTCCTTGTAGCCAAATGATTGCAGGGCGGCTTTGCCGGCC GTTAAGCAATCATTTGAAGC
Product: ABC transporter-like protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 236; Mature: 236
Protein sequence:
>236_residues MCLLQLSDIRVSYGSVEVLHGINLRVEEGEIVTILGANGAGKSTTLLSISGLVRPTSGEILFEGQNLLRLPSHKVVGLGI AQSPEGRRVFGVMSVLENLRLGAFCIEDKARSERTLEWIFDLFPRLLERKDQLAGTLSGGEQQMLAIGRALMAEPRLLLL DEPSLGLAPLLVRSIFETVRAINKRGVTVLLVEQNARAALKLASRGYVLEVGNVVMEDKAQSLLNNASVREAYLGG
Sequences:
>Translated_236_residues MCLLQLSDIRVSYGSVEVLHGINLRVEEGEIVTILGANGAGKSTTLLSISGLVRPTSGEILFEGQNLLRLPSHKVVGLGI AQSPEGRRVFGVMSVLENLRLGAFCIEDKARSERTLEWIFDLFPRLLERKDQLAGTLSGGEQQMLAIGRALMAEPRLLLL DEPSLGLAPLLVRSIFETVRAINKRGVTVLLVEQNARAALKLASRGYVLEVGNVVMEDKAQSLLNNASVREAYLGG >Mature_236_residues MCLLQLSDIRVSYGSVEVLHGINLRVEEGEIVTILGANGAGKSTTLLSISGLVRPTSGEILFEGQNLLRLPSHKVVGLGI AQSPEGRRVFGVMSVLENLRLGAFCIEDKARSERTLEWIFDLFPRLLERKDQLAGTLSGGEQQMLAIGRALMAEPRLLLL DEPSLGLAPLLVRSIFETVRAINKRGVTVLLVEQNARAALKLASRGYVLEVGNVVMEDKAQSLLNNASVREAYLGG
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27477115, Length=204, Percent_Identity=32.3529411764706, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI153792144, Length=203, Percent_Identity=33.0049261083744, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI27436953, Length=203, Percent_Identity=30.5418719211823, Blast_Score=84, Evalue=8e-17, Organism=Homo sapiens, GI42741659, Length=178, Percent_Identity=32.5842696629214, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4505771, Length=175, Percent_Identity=32, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI9961252, Length=175, Percent_Identity=32, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI27881501, Length=210, Percent_Identity=30.952380952381, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI30795238, Length=210, Percent_Identity=30.952380952381, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI9961250, Length=175, Percent_Identity=32, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI47078218, Length=200, Percent_Identity=30.5, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI45446740, Length=200, Percent_Identity=30.5, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI105990541, Length=197, Percent_Identity=28.9340101522843, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI150417984, Length=194, Percent_Identity=28.3505154639175, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27262624, Length=219, Percent_Identity=28.310502283105, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27262626, Length=219, Percent_Identity=28.310502283105, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI31657092, Length=200, Percent_Identity=29.5, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI156105685, Length=164, Percent_Identity=35.9756097560976, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI255708477, Length=160, Percent_Identity=30, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI21536376, Length=199, Percent_Identity=29.1457286432161, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI148612844, Length=231, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9665248, Length=180, Percent_Identity=28.8888888888889, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI116734710, Length=205, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=5e-12, Organism=Escherichia coli, GI87082268, Length=235, Percent_Identity=52.7659574468085, Blast_Score=254, Evalue=2e-69, Organism=Escherichia coli, GI1789864, Length=251, Percent_Identity=30.2788844621514, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI1789593, Length=239, Percent_Identity=31.3807531380753, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1787029, Length=230, Percent_Identity=30.4347826086957, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1786319, Length=225, Percent_Identity=34.6666666666667, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1787089, Length=236, Percent_Identity=32.6271186440678, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=30.4932735426009, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1789672, Length=226, Percent_Identity=28.7610619469027, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788761, Length=238, Percent_Identity=28.9915966386555, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87081709, Length=235, Percent_Identity=29.3617021276596, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1788225, Length=246, Percent_Identity=30.8943089430894, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787370, Length=222, Percent_Identity=31.5315315315315, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786398, Length=241, Percent_Identity=28.2157676348548, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790467, Length=236, Percent_Identity=34.3220338983051, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788472, Length=217, Percent_Identity=27.6497695852535, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788450, Length=237, Percent_Identity=29.1139240506329, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI87081791, Length=232, Percent_Identity=27.1551724137931, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1790544, Length=249, Percent_Identity=28.9156626506024, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=35.0467289719626, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1790162, Length=251, Percent_Identity=27.0916334661355, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI87081782, Length=197, Percent_Identity=31.4720812182741, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790525, Length=235, Percent_Identity=27.6595744680851, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1786253, Length=242, Percent_Identity=30.1652892561983, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1789873, Length=209, Percent_Identity=29.6650717703349, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1786872, Length=240, Percent_Identity=29.1666666666667, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1788897, Length=215, Percent_Identity=29.3023255813954, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1790190, Length=236, Percent_Identity=25, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787712, Length=227, Percent_Identity=29.9559471365639, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787105, Length=215, Percent_Identity=32.093023255814, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1788210, Length=207, Percent_Identity=29.4685990338164, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789991, Length=206, Percent_Identity=29.126213592233, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI48994943, Length=242, Percent_Identity=30.1652892561983, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788644, Length=243, Percent_Identity=30.0411522633745, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789032, Length=212, Percent_Identity=28.3018867924528, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI48995001, Length=207, Percent_Identity=28.0193236714976, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789586, Length=240, Percent_Identity=25.8333333333333, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI87082267, Length=223, Percent_Identity=30.9417040358744, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1786698, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=8e-14, Organism=Escherichia coli, GI1786703, Length=216, Percent_Identity=30.5555555555556, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787164, Length=221, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787758, Length=239, Percent_Identity=25.5230125523013, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786563, Length=214, Percent_Identity=30.3738317757009, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788506, Length=233, Percent_Identity=28.3261802575107, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787112, Length=207, Percent_Identity=33.8164251207729, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786803, Length=227, Percent_Identity=25.5506607929515, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789962, Length=251, Percent_Identity=24.7011952191235, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790739, Length=250, Percent_Identity=26, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786981, Length=213, Percent_Identity=35.6807511737089, Blast_Score=60, Evalue=9e-11, Organism=Caenorhabditis elegans, GI115533608, Length=203, Percent_Identity=33.4975369458128, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI193209708, Length=233, Percent_Identity=29.6137339055794, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71984940, Length=216, Percent_Identity=28.7037037037037, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71983510, Length=208, Percent_Identity=29.8076923076923, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71983523, Length=208, Percent_Identity=29.8076923076923, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17510237, Length=236, Percent_Identity=27.9661016949153, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71983516, Length=208, Percent_Identity=29.8076923076923, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17565586, Length=158, Percent_Identity=32.2784810126582, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI193202349, Length=240, Percent_Identity=26.25, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17543740, Length=161, Percent_Identity=32.2981366459627, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17558664, Length=163, Percent_Identity=31.9018404907975, Blast_Score=68, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193211017, Length=232, Percent_Identity=28.8793103448276, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193211015, Length=232, Percent_Identity=28.8793103448276, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71992290, Length=212, Percent_Identity=28.3018867924528, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI71996809, Length=232, Percent_Identity=28.8793103448276, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17569143, Length=177, Percent_Identity=29.9435028248588, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115533592, Length=208, Percent_Identity=29.8076923076923, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17541710, Length=175, Percent_Identity=31.4285714285714, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25146777, Length=226, Percent_Identity=24.3362831858407, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17567265, Length=212, Percent_Identity=28.3018867924528, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17569145, Length=177, Percent_Identity=29.3785310734463, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=230, Percent_Identity=26.9565217391304, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI221512771, Length=214, Percent_Identity=30.3738317757009, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24643674, Length=205, Percent_Identity=29.2682926829268, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI85725262, Length=188, Percent_Identity=32.9787234042553, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24666092, Length=218, Percent_Identity=27.5229357798165, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24650855, Length=214, Percent_Identity=29.4392523364486, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24650853, Length=214, Percent_Identity=29.4392523364486, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI28574533, Length=218, Percent_Identity=29.3577981651376, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI85726357, Length=243, Percent_Identity=29.2181069958848, Blast_Score=78, Evalue=4e-15, Organism=Drosophila melanogaster, GI281362751, Length=214, Percent_Identity=29.4392523364486, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24659289, Length=240, Percent_Identity=29.5833333333333, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24648314, Length=215, Percent_Identity=25.5813953488372, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24582014, Length=224, Percent_Identity=26.7857142857143, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24582012, Length=224, Percent_Identity=26.7857142857143, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI281363262, Length=200, Percent_Identity=28.5, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24653245, Length=202, Percent_Identity=28.2178217821782, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI221500365, Length=209, Percent_Identity=25.8373205741627, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007184, Length=209, Percent_Identity=25.8373205741627, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357907, Length=178, Percent_Identity=31.4606741573034, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24641565, Length=159, Percent_Identity=32.7044025157233, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25600; Mature: 25600
Theoretical pI: Translated: 7.42; Mature: 7.42
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCLLQLSDIRVSYGSVEVLHGINLRVEEGEIVTILGANGAGKSTTLLSISGLVRPTSGEI CEEEEEECEEEECCCEEEEECCEEEEECCCEEEEEECCCCCCCEEEEEEECEECCCCCCE LFEGQNLLRLPSHKVVGLGIAQSPEGRRVFGVMSVLENLRLGAFCIEDKARSERTLEWIF EECCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCHHCHHHHHHHHH DLFPRLLERKDQLAGTLSGGEQQMLAIGRALMAEPRLLLLDEPSLGLAPLLVRSIFETVR HHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH AINKRGVTVLLVEQNARAALKLASRGYVLEVGNVVMEDKAQSLLNNASVREAYLGG HHHHCCCEEEEEECCCCEEHHHHCCCEEEEECCCHHHHHHHHHHCCCHHHHHHCCC >Mature Secondary Structure MCLLQLSDIRVSYGSVEVLHGINLRVEEGEIVTILGANGAGKSTTLLSISGLVRPTSGEI CEEEEEECEEEECCCEEEEECCEEEEECCCEEEEEECCCCCCCEEEEEEECEECCCCCCE LFEGQNLLRLPSHKVVGLGIAQSPEGRRVFGVMSVLENLRLGAFCIEDKARSERTLEWIF EECCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCHHCHHHHHHHHH DLFPRLLERKDQLAGTLSGGEQQMLAIGRALMAEPRLLLLDEPSLGLAPLLVRSIFETVR HHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH AINKRGVTVLLVEQNARAALKLASRGYVLEVGNVVMEDKAQSLLNNASVREAYLGG HHHHCCCEEEEEECCCCEEHHHHCCCEEEEECCCHHHHHHHHHHCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]