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The map label for this gene is rfaF [C]

Identifier: 220903593

GI number: 220903593

Start: 383301

End: 385025

Strand: Direct

Name: rfaF [C]

Synonym: Ddes_0312

Alternate gene names: 220903593

Gene position: 383301-385025 (Clockwise)

Preceding gene: 220903592

Following gene: 220903594

Centisome position: 13.34

GC content: 63.01

Gene sequence:

>1725_bases
ATGAAGACAGAACCCTTCCACGCCCATATCCAGCAGCCACACGCTCTTGCGGCCGGCGAACATCCGGCAGGCGGGCGTGA
TGTTGTCATCATCAATCTGACCCGTTTTGGCGATCTGCTGCAAGGCCAGGCGCTCATACACGACCTGCACCATGCCGGGT
TGCGCGTGGGGCTTGTCTGTCTGGAAAACTTCGCTTCGGCCCTGCCGTTGCTGCAACATGTGGATGTGACCTGGCCTCTG
CCCGGCGCGCGCATCATGGCGGATGTGGAAGGCGACTGGCGGCGGGCCGCTCTGCGGCTGCTGTCTTTTGTGCGCGAAAT
CCGCAGAAGCATGCCCGATGCCCGGGTGATCAATCTTACTGCCACGCTGCCCGCACGTCTGCTGGCCCGCCTTGTGGCCT
CGCACCCCGGCGATATCACCGGGTTCGGCATGGATGCCGAAGGTTTTGGCTTCAGCGGCGGCGTATGGGCCTCCTTTCTT
GCGGGAACAGTGCTGCGGCGCCTGAACACGCCCTTCAACCTTGTGGACACGTTCCGTATGGTGGGGGCAAACGCCATGAC
AGGTACGGAAAAAGCGCGGCTTGCGGCAAATAGTACGATGCCCGGCAGCAGGCCAGGTTTGCAGCCGCCGCCCGAAGCGG
AACGGGCATTTGCCCGCGGCCTGCTCGAAGAGGGCGCGCCGGCGGCAGGCATTACATCGGCCTGCAAAGGCTTTGTGGCC
TTGCAGCTGGGGGCCAGCGAAGCAAAAAGGCAGTGGCCCGTAGCCTCCTTTGCCGCCCTGGGCGACAGGTTATGGCGCGA
GGCAGGGCTTTGTCCGGTCTTGCTTGGCAGCAGGGCGGAACAAGCCCTTGCCGAAGAGTATGTGCAGGCAGCCCGCGGTC
CCTGCATCTCTGCCGTGGGGCGCACCGATATCGCACAGCTGGCGGGCCTGCTCGCCCATTGCCGTCTTCTTGTCACCAAC
GACACCGGAACAATGCATCTGGCCGCGGGCCTGGGGGTGCCGTGTCTTGCCATATTTCTGGCCACGGCCCAGCCCTGGGA
TACCGGACCGTATTTGCCGGGTTGCTGCTGCCTTGAACCTGCCATGCCATGCCACCCCTGTCCCTACGGGCGCGCCTGCC
CGCACGGGCATGCCTGCCTCGGGCGTATCAGCCCCGAGGGTGTGGGCGATCTTGTTTGCGGCTGGCTTGCAACCGGGCGG
TGGAATGCGGCGCTTGAGAAAGGGGCGTCCTGCATCGGCCGTGAGGCCCGCGTGTGGCAGACGGAAACGGACAGTTACGG
CTTTGCCGCCTTGCGTTGCCTTTCGAAGCACGGCAGTGAAGACCGCAGCCAGTGGCTTGATGCGCAGCGCTTTTTGTGGC
GTCAGATGTTTGACAAACTGGGCGAGCGTGTGCCTTCAGACGGGCAGGGCCGTGCCATACCTGCAAAAATAGCTCTCAGC
CCGTCATTTGCAGCAGCGGTGGGGGACGTTCTGTCCCAGGCGCTGCAACTGCTGGCCTTGCTGGAAGAGCAGGCAGGCCT
GGTGGGTAAAAGCACCATGGCCGGGCAACTCTTTTTGCGTAATTGCGAGCGGTTGCAAAATCTGCTGGACGCCAGCCCGG
CGTTTACCGCCCTGGGCGGATTCTGGCGCGAACTGCGGCAGCAGAGGGGCGGCGATATGGCAGACCTGACCCAACTGATA
CAGTGTTTACGCTCTGCCCTAATGGAATGGAAAAACAGTATATAA

Upstream 100 bases:

>100_bases
AGGCCGCTGTGCAAAACCGCTTCCGTCAGGAACGCACCCTGGCCCTCAATCTTCTGGATGGCGGACACAAGGCCAATCTG
GCCTGACGGCCTGAGCGCTC

Downstream 100 bases:

>100_bases
ATAAAATGGCATACAGTTTGCTTTAACTGGTGCAGCCCTATGACGGCAAATTCTTCCCCGTGGGGACAGGAGGAACACTA
TGATAATCGTTGATGGTAAT

Product: glycosyl transferase family 9

Products: NA

Alternate protein names: Glycosyl Transferase Family Protein; Heptosyltransferase Family Protein; ADP-Heptose-LPS Heptosyltransferase II; ADP-Heptose-LPS Heptosyltransferase; Glycosyltransferase; ADP-HeptoseLPS Heptosyltransferase; Lipopolysaccharide Core Biosynthesis Protein Rfaq; Lipopolysaccharide Core Biosynthesis Glycosyl Transferase; ADP-Heptose-Lipopolysaccharide Heptosyltransferase II; Lipopolysaccharide Heptosyltransferase I; ADP-HeptoseLPS Heptosyltransferase II; ADP-Heptosyltransferase; Heptosyltransferase; Lipopolysaccharide Heptosyltransferase; Lipopolysaccharide Heptosyltransferase III; LPS Biosynthesis Related Glycosyltransferase; Family 9 Glycosyl Transferase; Glycosyl Transferase

Number of amino acids: Translated: 574; Mature: 574

Protein sequence:

>574_residues
MKTEPFHAHIQQPHALAAGEHPAGGRDVVIINLTRFGDLLQGQALIHDLHHAGLRVGLVCLENFASALPLLQHVDVTWPL
PGARIMADVEGDWRRAALRLLSFVREIRRSMPDARVINLTATLPARLLARLVASHPGDITGFGMDAEGFGFSGGVWASFL
AGTVLRRLNTPFNLVDTFRMVGANAMTGTEKARLAANSTMPGSRPGLQPPPEAERAFARGLLEEGAPAAGITSACKGFVA
LQLGASEAKRQWPVASFAALGDRLWREAGLCPVLLGSRAEQALAEEYVQAARGPCISAVGRTDIAQLAGLLAHCRLLVTN
DTGTMHLAAGLGVPCLAIFLATAQPWDTGPYLPGCCCLEPAMPCHPCPYGRACPHGHACLGRISPEGVGDLVCGWLATGR
WNAALEKGASCIGREARVWQTETDSYGFAALRCLSKHGSEDRSQWLDAQRFLWRQMFDKLGERVPSDGQGRAIPAKIALS
PSFAAAVGDVLSQALQLLALLEEQAGLVGKSTMAGQLFLRNCERLQNLLDASPAFTALGGFWRELRQQRGGDMADLTQLI
QCLRSALMEWKNSI

Sequences:

>Translated_574_residues
MKTEPFHAHIQQPHALAAGEHPAGGRDVVIINLTRFGDLLQGQALIHDLHHAGLRVGLVCLENFASALPLLQHVDVTWPL
PGARIMADVEGDWRRAALRLLSFVREIRRSMPDARVINLTATLPARLLARLVASHPGDITGFGMDAEGFGFSGGVWASFL
AGTVLRRLNTPFNLVDTFRMVGANAMTGTEKARLAANSTMPGSRPGLQPPPEAERAFARGLLEEGAPAAGITSACKGFVA
LQLGASEAKRQWPVASFAALGDRLWREAGLCPVLLGSRAEQALAEEYVQAARGPCISAVGRTDIAQLAGLLAHCRLLVTN
DTGTMHLAAGLGVPCLAIFLATAQPWDTGPYLPGCCCLEPAMPCHPCPYGRACPHGHACLGRISPEGVGDLVCGWLATGR
WNAALEKGASCIGREARVWQTETDSYGFAALRCLSKHGSEDRSQWLDAQRFLWRQMFDKLGERVPSDGQGRAIPAKIALS
PSFAAAVGDVLSQALQLLALLEEQAGLVGKSTMAGQLFLRNCERLQNLLDASPAFTALGGFWRELRQQRGGDMADLTQLI
QCLRSALMEWKNSI
>Mature_574_residues
MKTEPFHAHIQQPHALAAGEHPAGGRDVVIINLTRFGDLLQGQALIHDLHHAGLRVGLVCLENFASALPLLQHVDVTWPL
PGARIMADVEGDWRRAALRLLSFVREIRRSMPDARVINLTATLPARLLARLVASHPGDITGFGMDAEGFGFSGGVWASFL
AGTVLRRLNTPFNLVDTFRMVGANAMTGTEKARLAANSTMPGSRPGLQPPPEAERAFARGLLEEGAPAAGITSACKGFVA
LQLGASEAKRQWPVASFAALGDRLWREAGLCPVLLGSRAEQALAEEYVQAARGPCISAVGRTDIAQLAGLLAHCRLLVTN
DTGTMHLAAGLGVPCLAIFLATAQPWDTGPYLPGCCCLEPAMPCHPCPYGRACPHGHACLGRISPEGVGDLVCGWLATGR
WNAALEKGASCIGREARVWQTETDSYGFAALRCLSKHGSEDRSQWLDAQRFLWRQMFDKLGERVPSDGQGRAIPAKIALS
PSFAAAVGDVLSQALQLLALLEEQAGLVGKSTMAGQLFLRNCERLQNLLDASPAFTALGGFWRELRQQRGGDMADLTQLI
QCLRSALMEWKNSI

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 61583; Mature: 61583

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEPFHAHIQQPHALAAGEHPAGGRDVVIINLTRFGDLLQGQALIHDLHHAGLRVGLVC
CCCCCCHHHHCCCCHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
LENFASALPLLQHVDVTWPLPGARIMADVEGDWRRAALRLLSFVREIRRSMPDARVINLT
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
ATLPARLLARLVASHPGDITGFGMDAEGFGFSGGVWASFLAGTVLRRLNTPFNLVDTFRM
HHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
VGANAMTGTEKARLAANSTMPGSRPGLQPPPEAERAFARGLLEEGAPAAGITSACKGFVA
HCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHE
LQLGASEAKRQWPVASFAALGDRLWREAGLCPVLLGSRAEQALAEEYVQAARGPCISAVG
EEECHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHC
RTDIAQLAGLLAHCRLLVTNDTGTMHLAAGLGVPCLAIFLATAQPWDTGPYLPGCCCLEP
CHHHHHHHHHHHHCEEEEECCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
AMPCHPCPYGRACPHGHACLGRISPEGVGDLVCGWLATGRWNAALEKGASCIGREARVWQ
CCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEE
TETDSYGFAALRCLSKHGSEDRSQWLDAQRFLWRQMFDKLGERVPSDGQGRAIPAKIALS
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
PSFAAAVGDVLSQALQLLALLEEQAGLVGKSTMAGQLFLRNCERLQNLLDASPAFTALGG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FWRELRQQRGGDMADLTQLIQCLRSALMEWKNSI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTEPFHAHIQQPHALAAGEHPAGGRDVVIINLTRFGDLLQGQALIHDLHHAGLRVGLVC
CCCCCCHHHHCCCCHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
LENFASALPLLQHVDVTWPLPGARIMADVEGDWRRAALRLLSFVREIRRSMPDARVINLT
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
ATLPARLLARLVASHPGDITGFGMDAEGFGFSGGVWASFLAGTVLRRLNTPFNLVDTFRM
HHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
VGANAMTGTEKARLAANSTMPGSRPGLQPPPEAERAFARGLLEEGAPAAGITSACKGFVA
HCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHE
LQLGASEAKRQWPVASFAALGDRLWREAGLCPVLLGSRAEQALAEEYVQAARGPCISAVG
EEECHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHC
RTDIAQLAGLLAHCRLLVTNDTGTMHLAAGLGVPCLAIFLATAQPWDTGPYLPGCCCLEP
CHHHHHHHHHHHHCEEEEECCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
AMPCHPCPYGRACPHGHACLGRISPEGVGDLVCGWLATGRWNAALEKGASCIGREARVWQ
CCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEE
TETDSYGFAALRCLSKHGSEDRSQWLDAQRFLWRQMFDKLGERVPSDGQGRAIPAKIALS
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
PSFAAAVGDVLSQALQLLALLEEQAGLVGKSTMAGQLFLRNCERLQNLLDASPAFTALGG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FWRELRQQRGGDMADLTQLIQCLRSALMEWKNSI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA