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The map label for this gene is yohK [H]

Identifier: 220903494

GI number: 220903494

Start: 262486

End: 263199

Strand: Direct

Name: yohK [H]

Synonym: Ddes_0212

Alternate gene names: 220903494

Gene position: 262486-263199 (Clockwise)

Preceding gene: 220903493

Following gene: 220903495

Centisome position: 9.13

GC content: 58.4

Gene sequence:

>714_bases
ATGCAGTCCTATGTAAGCATAAGCACGGTTCTTTGCATTCTGGGCACGTTGCTGGCCTACATGGCGGTGCGCGCCCTGTA
CATGCGCTACAGGCATCCGTTGATCAATATTGTGGCTCTTGGGGCGGCGATTATCATCACTGTGCTGGTGGTCTGTGATC
TTCCCTATGCCGTGTATGAACCAGCAGCGAAAATCATGACGGTATTCATCGGCCCTGCCACCGTGGCGCTGGCCTTGCCC
CTGTATCGCTACAGGCAGGTGCTTTTACGCTATGTGCTCGCCATTACGGGCAGCGTATGCGCAGGGGCCTTTGTGGCCAT
GTTTTCTGCGGGTCTTATCGCCAGACTTGGCGGGCTGCCCCAGGAAGTGGTTATTTCCATTATGCCCAAGAGTGTTTCCA
TACCTTTTGCCATTGAAGTCGCCGGGCTTTACGGAGGTATACCCTCGCTGGCGGCGGCTTTTGTGGTAGCCACGGGAACC
CTTGGCTCGCTCATCGGCGGCTGGACACTTAATCTCGCGGGCGTGGCTGATCCGTTTGCGCGTGGACTGTCGCTCGGCAC
GGTGTCCCACGCGCAGGGTACGGCGGCGGCTTTGCAGGAAGGGGAAGAGCAGGGCGCCATGGCGGGGCTGGCACTTATTC
TGGCTGGTATTATTACTGCCGCCATCGCTCCTGTCGTGGTCTGGCTGGTGCTGTGTTTTCCCGGCATAGCGTAG

Upstream 100 bases:

>100_bases
TGCTGGCAGCCATTGTTGTGGGGGCCATTTTACCCCTGCTGACAGTGGGGCTTCTGGGCAGGGCTTTGCGCCGTCGCACG
CGCCGGAAGGAGGAAGAATC

Downstream 100 bases:

>100_bases
ACCGCTTTTGGCTGAAGGCTGATTTGACGGTGTGTGTGCGGATGTCCACCTCAGGGATGTGAGTAAAATTTACTCGTCTG
AATGAGCCTGTGGGTAAAAT

Product: LrgB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MQSYVSISTVLCILGTLLAYMAVRALYMRYRHPLINIVALGAAIIITVLVVCDLPYAVYEPAAKIMTVFIGPATVALALP
LYRYRQVLLRYVLAITGSVCAGAFVAMFSAGLIARLGGLPQEVVISIMPKSVSIPFAIEVAGLYGGIPSLAAAFVVATGT
LGSLIGGWTLNLAGVADPFARGLSLGTVSHAQGTAAALQEGEEQGAMAGLALILAGIITAAIAPVVVWLVLCFPGIA

Sequences:

>Translated_237_residues
MQSYVSISTVLCILGTLLAYMAVRALYMRYRHPLINIVALGAAIIITVLVVCDLPYAVYEPAAKIMTVFIGPATVALALP
LYRYRQVLLRYVLAITGSVCAGAFVAMFSAGLIARLGGLPQEVVISIMPKSVSIPFAIEVAGLYGGIPSLAAAFVVATGT
LGSLIGGWTLNLAGVADPFARGLSLGTVSHAQGTAAALQEGEEQGAMAGLALILAGIITAAIAPVVVWLVLCFPGIA
>Mature_237_residues
MQSYVSISTVLCILGTLLAYMAVRALYMRYRHPLINIVALGAAIIITVLVVCDLPYAVYEPAAKIMTVFIGPATVALALP
LYRYRQVLLRYVLAITGSVCAGAFVAMFSAGLIARLGGLPQEVVISIMPKSVSIPFAIEVAGLYGGIPSLAAAFVVATGT
LGSLIGGWTLNLAGVADPFARGLSLGTVSHAQGTAAALQEGEEQGAMAGLALILAGIITAAIAPVVVWLVLCFPGIA

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=222, Percent_Identity=38.7387387387387, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 24419; Mature: 24419

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSYVSISTVLCILGTLLAYMAVRALYMRYRHPLINIVALGAAIIITVLVVCDLPYAVYE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
PAAKIMTVFIGPATVALALPLYRYRQVLLRYVLAITGSVCAGAFVAMFSAGLIARLGGLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QEVVISIMPKSVSIPFAIEVAGLYGGIPSLAAAFVVATGTLGSLIGGWTLNLAGVADPFA
HHHHHHHCCCCCCCCHHEEHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHH
RGLSLGTVSHAQGTAAALQEGEEQGAMAGLALILAGIITAAIAPVVVWLVLCFPGIA
CCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQSYVSISTVLCILGTLLAYMAVRALYMRYRHPLINIVALGAAIIITVLVVCDLPYAVYE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
PAAKIMTVFIGPATVALALPLYRYRQVLLRYVLAITGSVCAGAFVAMFSAGLIARLGGLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QEVVISIMPKSVSIPFAIEVAGLYGGIPSLAAAFVVATGTLGSLIGGWTLNLAGVADPFA
HHHHHHHCCCCCCCCHHEEHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHH
RGLSLGTVSHAQGTAAALQEGEEQGAMAGLALILAGIITAAIAPVVVWLVLCFPGIA
CCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]