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The map label for this gene is fliR [H]

Identifier: 220903477

GI number: 220903477

Start: 244998

End: 245789

Strand: Reverse

Name: fliR [H]

Synonym: Ddes_0193

Alternate gene names: 220903477

Gene position: 245789-244998 (Counterclockwise)

Preceding gene: 220903478

Following gene: 220903474

Centisome position: 8.55

GC content: 55.3

Gene sequence:

>792_bases
ATGGACGTGTTCGGATATAATCAGGCCGAGGTTTTAAGCCTCATATTGACCATGATGCGGGTAAGTATCGTCATGTTCAT
GCTGCCTGTTTTTTCCACAAACAACATCCCCATTCAGGTCAAAGCCGCCGTCACCCTTGTATTCACACTGGGTGTATGGC
CGCATCTGGCCCTGCCGGGCAGTTCCATGCCCGCGCACCCCTTTGATCTGGTGCTCATGGTTCTGGGCGAAGCCGTGCTG
GGCCTTGTGCTGGGCATGGCCGTCAATTTTCTGTTCATGGGCATTCAGGCCGGGGGAGAACTGCTGGGCTTTCAGATGGG
CTTTACCATGATCAACTTTGCAGACCCGCTTACCGGAAACCAGACCGGCATCACGGCGTTTTTTCTCTGGATGGTGTCGC
TGCTGACCTTTCTTTCCCTGGACGGGCATCTGTACATGATCAAGGGCTTTGCGGCATCGTTCAAGATCGTGCCGCCGGGG
GCGCTGTTCATAGGGTCCAACATCCTGTGGCAGATACTGCATCTGGCCGCACAGATGTTTGTGCTGGCCCTGCAAATTGC
GGCTCCCGTCATGGTGGCGCTTTTTATGGTTGAGGTGGCGCTGGGCCTTGTGGCCCGCACATCACCCCAGATACATATTA
TGGAGTTCGGCTTTCCGGCCAAGATCGGCGTAGGATTTTTCTTTGTGGGCCTGCTGCTCGTCATCATGGCCGACCATGTG
GAAACATTCATTCTGGGGCTGGACGGCCTGTTCACCAACCTGCTGCGCTCCATGAGCACACTGTATCAGTAG

Upstream 100 bases:

>100_bases
GGCTGGATTTTGTCCGGCGTTTCGCCACATGTCACGCTTCTGACGCGCCCGATACATAACAGGCTGTTCTTTTTGGCAAC
CATTTTGCAAGTTTCCCGGT

Downstream 100 bases:

>100_bases
GATTGGCATCACCCGGACGGGATCGGCATGCCCTGCTCCCCGATGCGCCGACGTCTGGGACCTGCGCGCGCCATGCAGCC
TCAAAGATTGGTCCCGACTG

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MDVFGYNQAEVLSLILTMMRVSIVMFMLPVFSTNNIPIQVKAAVTLVFTLGVWPHLALPGSSMPAHPFDLVLMVLGEAVL
GLVLGMAVNFLFMGIQAGGELLGFQMGFTMINFADPLTGNQTGITAFFLWMVSLLTFLSLDGHLYMIKGFAASFKIVPPG
ALFIGSNILWQILHLAAQMFVLALQIAAPVMVALFMVEVALGLVARTSPQIHIMEFGFPAKIGVGFFFVGLLLVIMADHV
ETFILGLDGLFTNLLRSMSTLYQ

Sequences:

>Translated_263_residues
MDVFGYNQAEVLSLILTMMRVSIVMFMLPVFSTNNIPIQVKAAVTLVFTLGVWPHLALPGSSMPAHPFDLVLMVLGEAVL
GLVLGMAVNFLFMGIQAGGELLGFQMGFTMINFADPLTGNQTGITAFFLWMVSLLTFLSLDGHLYMIKGFAASFKIVPPG
ALFIGSNILWQILHLAAQMFVLALQIAAPVMVALFMVEVALGLVARTSPQIHIMEFGFPAKIGVGFFFVGLLLVIMADHV
ETFILGLDGLFTNLLRSMSTLYQ
>Mature_263_residues
MDVFGYNQAEVLSLILTMMRVSIVMFMLPVFSTNNIPIQVKAAVTLVFTLGVWPHLALPGSSMPAHPFDLVLMVLGEAVL
GLVLGMAVNFLFMGIQAGGELLGFQMGFTMINFADPLTGNQTGITAFFLWMVSLLTFLSLDGHLYMIKGFAASFKIVPPG
ALFIGSNILWQILHLAAQMFVLALQIAAPVMVALFMVEVALGLVARTSPQIHIMEFGFPAKIGVGFFFVGLLLVIMADHV
ETFILGLDGLFTNLLRSMSTLYQ

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=224, Percent_Identity=28.125, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28598; Mature: 28598

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.2 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.2 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVFGYNQAEVLSLILTMMRVSIVMFMLPVFSTNNIPIQVKAAVTLVFTLGVWPHLALPG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCHHCCCCC
SSMPAHPFDLVLMVLGEAVLGLVLGMAVNFLFMGIQAGGELLGFQMGFTMINFADPLTGN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
QTGITAFFLWMVSLLTFLSLDGHLYMIKGFAASFKIVPPGALFIGSNILWQILHLAAQMF
CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCHHHHCHHHHHHHHHHHHHHH
VLALQIAAPVMVALFMVEVALGLVARTSPQIHIMEFGFPAKIGVGFFFVGLLLVIMADHV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
ETFILGLDGLFTNLLRSMSTLYQ
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDVFGYNQAEVLSLILTMMRVSIVMFMLPVFSTNNIPIQVKAAVTLVFTLGVWPHLALPG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCHHCCCCC
SSMPAHPFDLVLMVLGEAVLGLVLGMAVNFLFMGIQAGGELLGFQMGFTMINFADPLTGN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
QTGITAFFLWMVSLLTFLSLDGHLYMIKGFAASFKIVPPGALFIGSNILWQILHLAAQMF
CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCHHHHCHHHHHHHHHHHHHHH
VLALQIAAPVMVALFMVEVALGLVARTSPQIHIMEFGFPAKIGVGFFFVGLLLVIMADHV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
ETFILGLDGLFTNLLRSMSTLYQ
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]