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The map label for this gene is rimP

Identifier: 220903348

GI number: 220903348

Start: 81202

End: 81978

Strand: Reverse

Name: rimP

Synonym: Ddes_0062

Alternate gene names: 220903348

Gene position: 81978-81202 (Counterclockwise)

Preceding gene: 220903350

Following gene: 220903347

Centisome position: 2.85

GC content: 63.32

Gene sequence:

>777_bases
ATGACTGATAACGCCCTGAGAGAAACCATCATACGCCTGGCCCAACCCGTGGTGCACACCCTCGGACTTGTCATCTGGGG
GGTGGAAACAGCCCGCGCCGGGCGCACCATCGTGCGGCTCTTTGTAGACGTGCCGACGATACCGCAACGGCCCGGCATGC
CCGAAGGGTCTGAAGAGCCATCATCAGCCATCACCGCGCCTGCTCCGGCTCATGATCCACAAGAATCTTCCGGCGCTGAA
GCGCCGGCCGCCCCCACATCCGCTACCATTGAACAGTGCGAAGAAATTTCCCGCCATCTGGCCCTTGCTCTTGAAGTGGA
GGACAGCATCGCGGACGCCTACGTGCTGGAGGTTTCGACCCCCGGCCTGAGCCGCCTGTTCTTCAGCCTTGAGCAGATGA
TCCCCTATGTGGGCGACGTGGTGGAAGCGCGGCTGCACACGCCTGTCGCCTCCACTGATCCCGCAGCCCACGGTGGCCCG
CGCCGCGTGTGGCGCGGCACGCTCGTCGCAGTTGAGGACGATGCCTTTGTGCTCGCGCCCGTGACCGTCAGCCCCGAAGG
CGAAGTGGAAGACGAAAACCAGCCGCCCGTGCGCCTGCCCTGGGAGGCGGTACGCAGGGCCACCCGTATGTATATTTTCA
AAAAGCCGCAGAAGCCGGGCAAAAAACCCGGCAAGCCCCAAGGCAAAGAAGTCCCCAAGGGCGGCAGCGGCAGTACGGCC
CCCAAAAAGGCCGCAGCCAAAAAGAAAGCTGGCAGAACCGCTGCCGAAAACGACTAG

Upstream 100 bases:

>100_bases
GCCACTACATCCTGATGCGGAACGCAGTTCCAGCGGGGTGGCCTGAATAGGCCCCCTTTTTTTTGTCCCTGCGCCGGCGC
TTGCCCGCACAAAGGAAAGA

Downstream 100 bases:

>100_bases
ACGGCCCGCAGGGGCAGGCCGCGCCCCCGCCTCGGCGGGCGGGCCGCCCGTGAGCCGCAGCCGGAACAAGCGATTTTACG
CCGCCCTGTGCGGCAGCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTDNALRETIIRLAQPVVHTLGLVIWGVETARAGRTIVRLFVDVPTIPQRPGMPEGSEEPSSAITAPAPAHDPQESSGAE
APAAPTSATIEQCEEISRHLALALEVEDSIADAYVLEVSTPGLSRLFFSLEQMIPYVGDVVEARLHTPVASTDPAAHGGP
RRVWRGTLVAVEDDAFVLAPVTVSPEGEVEDENQPPVRLPWEAVRRATRMYIFKKPQKPGKKPGKPQGKEVPKGGSGSTA
PKKAAAKKKAGRTAAEND

Sequences:

>Translated_258_residues
MTDNALRETIIRLAQPVVHTLGLVIWGVETARAGRTIVRLFVDVPTIPQRPGMPEGSEEPSSAITAPAPAHDPQESSGAE
APAAPTSATIEQCEEISRHLALALEVEDSIADAYVLEVSTPGLSRLFFSLEQMIPYVGDVVEARLHTPVASTDPAAHGGP
RRVWRGTLVAVEDDAFVLAPVTVSPEGEVEDENQPPVRLPWEAVRRATRMYIFKKPQKPGKKPGKPQGKEVPKGGSGSTA
PKKAAAKKKAGRTAAEND
>Mature_257_residues
TDNALRETIIRLAQPVVHTLGLVIWGVETARAGRTIVRLFVDVPTIPQRPGMPEGSEEPSSAITAPAPAHDPQESSGAEA
PAAPTSATIEQCEEISRHLALALEVEDSIADAYVLEVSTPGLSRLFFSLEQMIPYVGDVVEARLHTPVASTDPAAHGGPR
RVWRGTLVAVEDDAFVLAPVTVSPEGEVEDENQPPVRLPWEAVRRATRMYIFKKPQKPGKKPGKPQGKEVPKGGSGSTAP
KKAAAKKKAGRTAAEND

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_DESDA (B8J1Y7)

Other databases:

- EMBL:   CP001358
- RefSeq:   YP_002478660.1
- GeneID:   7283713
- GenomeReviews:   CP001358_GR
- KEGG:   dds:Ddes_0062
- HOGENOM:   HBG668072
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 27552; Mature: 27420

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDNALRETIIRLAQPVVHTLGLVIWGVETARAGRTIVRLFVDVPTIPQRPGMPEGSEEP
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
SSAITAPAPAHDPQESSGAEAPAAPTSATIEQCEEISRHLALALEVEDSIADAYVLEVST
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCEEEEEECC
PGLSRLFFSLEQMIPYVGDVVEARLHTPVASTDPAAHGGPRRVWRGTLVAVEDDAFVLAP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCEEEEEECCCEEEEE
VTVSPEGEVEDENQPPVRLPWEAVRRATRMYIFKKPQKPGKKPGKPQGKEVPKGGSGSTA
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCC
PKKAAAKKKAGRTAAEND
CHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TDNALRETIIRLAQPVVHTLGLVIWGVETARAGRTIVRLFVDVPTIPQRPGMPEGSEEP
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
SSAITAPAPAHDPQESSGAEAPAAPTSATIEQCEEISRHLALALEVEDSIADAYVLEVST
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCEEEEEECC
PGLSRLFFSLEQMIPYVGDVVEARLHTPVASTDPAAHGGPRRVWRGTLVAVEDDAFVLAP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCEEEEEECCCEEEEE
VTVSPEGEVEDENQPPVRLPWEAVRRATRMYIFKKPQKPGKKPGKPQGKEVPKGGSGSTA
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCC
PKKAAAKKKAGRTAAEND
CHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA