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The map label for this gene is yqgF [C]

Identifier: 220903317

GI number: 220903317

Start: 42499

End: 42921

Strand: Reverse

Name: yqgF [C]

Synonym: Ddes_0031

Alternate gene names: 220903317

Gene position: 42921-42499 (Counterclockwise)

Preceding gene: 220903318

Following gene: 220903316

Centisome position: 1.49

GC content: 62.17

Gene sequence:

>423_bases
GTGGATTACGGCCTGGCCCGCACGGGCCTGGCCGTGTCAGACCCTGACGGGCGAATGGCTTTCCCCCTGGCGACCGTGCG
CCTGCAGGACTACACTGACCGCAAGCTCTTTCTCGCCGCCCTGGCGGAAAAAATCATTGAAGCAGGGGCCGAAGCGGTTG
TGGTGGGCCTGCCCCTCACGCAGGACGGAAAAGAAAGCCTGACCACAAGGCAGGTGCGCAATGTTACCCAGCGCCTCAAG
CGCCGTATCCCCCTGCCCTTTTACTACATGGTTGAAGAGCTGAGTTCTGAAGAAGCCTGGGCTGACCTGCGCGAGGCCGG
GCTCAAAATGCGCAAGCGCAAGGCCGTACTTGACCAGCAGGCTGCCGTGCGCATTCTTTCGTCCTTTCTAGCCCTTGCCC
CGCAAGAGCGGAGTCCCGCATGA

Upstream 100 bases:

>100_bases
TGAAATTCTTGCCCACGGCAATGAGCGCGCCCGCGCCTTTGCCTGCCAGACCATGAGCCTGGTACGCGAAAAAATGGGGG
TGTAGTTGAAATTTGTAAGT

Downstream 100 bases:

>100_bases
AAACACTGCTGCGCCTGCTCGGACTGCTGTTGCTGCTGGCCCTGGCCGGTGGCGGCTGGCTTGCTTACGAGGCTCATACC
TTCCTGAATACCCCGGCGCA

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MDYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLTQDGKESLTTRQVRNVTQRLK
RRIPLPFYYMVEELSSEEAWADLREAGLKMRKRKAVLDQQAAVRILSSFLALAPQERSPA

Sequences:

>Translated_140_residues
MDYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLTQDGKESLTTRQVRNVTQRLK
RRIPLPFYYMVEELSSEEAWADLREAGLKMRKRKAVLDQQAAVRILSSFLALAPQERSPA
>Mature_140_residues
MDYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLTQDGKESLTTRQVRNVTQRLK
RRIPLPFYYMVEELSSEEAWADLREAGLKMRKRKAVLDQQAAVRILSSFLALAPQERSPA

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15618; Mature: 15618

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLT
CCCCCCCCCCEEECCCCCEECHHHHEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
QDGKESLTTRQVRNVTQRLKRRIPLPFYYMVEELSSEEAWADLREAGLKMRKRKAVLDQQ
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AAVRILSSFLALAPQERSPA
HHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLT
CCCCCCCCCCEEECCCCCEECHHHHEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
QDGKESLTTRQVRNVTQRLKRRIPLPFYYMVEELSSEEAWADLREAGLKMRKRKAVLDQQ
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AAVRILSSFLALAPQERSPA
HHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA