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The map label for this gene is sufD [H]

Identifier: 218906175

GI number: 218906175

Start: 4794320

End: 4795612

Strand: Reverse

Name: sufD [H]

Synonym: BCAH820_5087

Alternate gene names: 218906175

Gene position: 4795612-4794320 (Counterclockwise)

Preceding gene: 218906176

Following gene: 218906174

Centisome position: 90.44

GC content: 41.69

Gene sequence:

>1293_bases
ATGACAATCGGTACATTACCTTTCGATCAAGAAACAATCCGTCAACGCGCAAGCGAAGTAAACGAAGCAGCTTGGTTGAC
TGAGTTCCGCTTACAAGCTCTTGCACAAGCAACTGAACTTCCAATGCCAACGCCTGATAAAACGAAAATTGAAAAATGGG
ACTTTATCGGAAAAGGCGACGCTGCTAAGCAAGAGCCTGTAAGTTCTTTAACAGAGCTTCCAGAAGCAGTGAAAAACTTA
ATCGATGAAAATAACAGCGTATTAGTGCAACGTACTGGTACAACTGCATTCGTTTCTTTAGCAGACGAAGCAAAAGAAAA
AGGTGTTATTTTCACAGACATCGTAACAGCTGCAACTGAGCATGCTGAACTAGTACAAAAGTACTTAATGAAAGACGGCG
TGAAGGTAGACGAGCATCGTTTAACTGCACTTCATGCTGCATTAATCAACGGCGGTGCATTCGTATATGTTCCGAAAAAC
GTTGTTCTTGAAACTCCACTTCAAGCTGTATTCTTAGTAGACGGCGAAGAAGCTAACGTATATAACCACGTATTATTCGT
AGCTGATGCGAACAGTACTGCAACTTATGTAGAAAACTACGTTGCAAATGAAAATGCTAAAGGTATTGCAAATATCGTAG
CAGAAGTAATCGTGGAACAAGGCGCACAAGTGAAATTTGGTGCGGTTGATCTATTAGCAAAAGACGTAACAACTTACGTT
AACCGCCGCGGCACAGTAGGACGCGACGGCCGCATTGATTGGGCTCTAGGCCTTATGAATGACGGAAACACAATTTCAGA
GAACGTTACAAACTTAATGGGCGACGGTTCATATGCTGATACGAAAACAGTAACAATTGGCCGTGGTAACCAAACACAAA
ACTTTACAACTAAAGTTGTTCACTTCGGTAAACACTCTGAAGGTTGGATTTTAAAACACGGTGTACAAAAAGATAGTGCA
ACATCTATCTTTAACGGAATTGGTAAGATTGAACACGGTGCATCTAAATCAAATGCACAACAATCTTCCCGCGTTCTTAT
GTTAGATGAAAAAGCACGCGGTGATGCAAACCCAATTCTTTTAATCGACGAAGATGATGTAATGGCAGGTCACGCAGCTT
CAGTAGGTCGCGTAGATCCAATCCAACTATACTACTTGATGAGCCGTGGTATTCCAAAACGCGAAGCAGAACGTTTAGTC
ATCCATGGATTCTTAGCACCTGTAGTTAATGAGCTTCCAATTGAAGGAGTAAAGGCACAGCTTGTTGAGGTAATTGAAAG
GAAAGTTCGCTAA

Upstream 100 bases:

>100_bases
TGCACAACGTCTAGAAGCTGAAGGTTACGACTGGATTAAAAAAGAATTAGGTATTGAAGACGAAACAACAGAGCAAGAAG
CGTAAGAGAGGAGCATAAAC

Downstream 100 bases:

>100_bases
TGAATATTCATGAAATACGCAAACAGTTTCCAATTCTTGATCAAAAAGTGAACGGCAAACAACTTGTTTATTTCGATAGT
GCAGCAACTTCTCAAAAACC

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MTIGTLPFDQETIRQRASEVNEAAWLTEFRLQALAQATELPMPTPDKTKIEKWDFIGKGDAAKQEPVSSLTELPEAVKNL
IDENNSVLVQRTGTTAFVSLADEAKEKGVIFTDIVTAATEHAELVQKYLMKDGVKVDEHRLTALHAALINGGAFVYVPKN
VVLETPLQAVFLVDGEEANVYNHVLFVADANSTATYVENYVANENAKGIANIVAEVIVEQGAQVKFGAVDLLAKDVTTYV
NRRGTVGRDGRIDWALGLMNDGNTISENVTNLMGDGSYADTKTVTIGRGNQTQNFTTKVVHFGKHSEGWILKHGVQKDSA
TSIFNGIGKIEHGASKSNAQQSSRVLMLDEKARGDANPILLIDEDDVMAGHAASVGRVDPIQLYYLMSRGIPKREAERLV
IHGFLAPVVNELPIEGVKAQLVEVIERKVR

Sequences:

>Translated_430_residues
MTIGTLPFDQETIRQRASEVNEAAWLTEFRLQALAQATELPMPTPDKTKIEKWDFIGKGDAAKQEPVSSLTELPEAVKNL
IDENNSVLVQRTGTTAFVSLADEAKEKGVIFTDIVTAATEHAELVQKYLMKDGVKVDEHRLTALHAALINGGAFVYVPKN
VVLETPLQAVFLVDGEEANVYNHVLFVADANSTATYVENYVANENAKGIANIVAEVIVEQGAQVKFGAVDLLAKDVTTYV
NRRGTVGRDGRIDWALGLMNDGNTISENVTNLMGDGSYADTKTVTIGRGNQTQNFTTKVVHFGKHSEGWILKHGVQKDSA
TSIFNGIGKIEHGASKSNAQQSSRVLMLDEKARGDANPILLIDEDDVMAGHAASVGRVDPIQLYYLMSRGIPKREAERLV
IHGFLAPVVNELPIEGVKAQLVEVIERKVR
>Mature_429_residues
TIGTLPFDQETIRQRASEVNEAAWLTEFRLQALAQATELPMPTPDKTKIEKWDFIGKGDAAKQEPVSSLTELPEAVKNLI
DENNSVLVQRTGTTAFVSLADEAKEKGVIFTDIVTAATEHAELVQKYLMKDGVKVDEHRLTALHAALINGGAFVYVPKNV
VLETPLQAVFLVDGEEANVYNHVLFVADANSTATYVENYVANENAKGIANIVAEVIVEQGAQVKFGAVDLLAKDVTTYVN
RRGTVGRDGRIDWALGLMNDGNTISENVTNLMGDGSYADTKTVTIGRGNQTQNFTTKVVHFGKHSEGWILKHGVQKDSAT
SIFNGIGKIEHGASKSNAQQSSRVLMLDEKARGDANPILLIDEDDVMAGHAASVGRVDPIQLYYLMSRGIPKREAERLVI
HGFLAPVVNELPIEGVKAQLVEVIERKVR

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=446, Percent_Identity=25.3363228699552, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI1787971, Length=262, Percent_Identity=27.4809160305344, Blast_Score=88, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 46901; Mature: 46770

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIGTLPFDQETIRQRASEVNEAAWLTEFRLQALAQATELPMPTPDKTKIEKWDFIGKGD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCC
AAKQEPVSSLTELPEAVKNLIDENNSVLVQRTGTTAFVSLADEAKEKGVIFTDIVTAATE
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEHHHHHHCCEEEEHHHHHHHH
HAELVQKYLMKDGVKVDEHRLTALHAALINGGAFVYVPKNVVLETPLQAVFLVDGEEANV
HHHHHHHHHHHCCCEECHHHHHHHHHHHHCCCEEEEECCCEEEECCCEEEEEEECCCCCE
YNHVLFVADANSTATYVENYVANENAKGIANIVAEVIVEQGAQVKFGAVDLLAKDVTTYV
EEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH
NRRGTVGRDGRIDWALGLMNDGNTISENVTNLMGDGSYADTKTVTIGRGNQTQNFTTKVV
HCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEE
HFGKHSEGWILKHGVQKDSATSIFNGIGKIEHGASKSNAQQSSRVLMLDEKARGDANPIL
EECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCEEEEECCCCCCCCCEE
LIDEDDVMAGHAASVGRVDPIQLYYLMSRGIPKREAERLVIHGFLAPVVNELPIEGVKAQ
EECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LVEVIERKVR
HHHHHHHHCC
>Mature Secondary Structure 
TIGTLPFDQETIRQRASEVNEAAWLTEFRLQALAQATELPMPTPDKTKIEKWDFIGKGD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCC
AAKQEPVSSLTELPEAVKNLIDENNSVLVQRTGTTAFVSLADEAKEKGVIFTDIVTAATE
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEHHHHHHCCEEEEHHHHHHHH
HAELVQKYLMKDGVKVDEHRLTALHAALINGGAFVYVPKNVVLETPLQAVFLVDGEEANV
HHHHHHHHHHHCCCEECHHHHHHHHHHHHCCCEEEEECCCEEEECCCEEEEEEECCCCCE
YNHVLFVADANSTATYVENYVANENAKGIANIVAEVIVEQGAQVKFGAVDLLAKDVTTYV
EEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH
NRRGTVGRDGRIDWALGLMNDGNTISENVTNLMGDGSYADTKTVTIGRGNQTQNFTTKVV
HCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEE
HFGKHSEGWILKHGVQKDSATSIFNGIGKIEHGASKSNAQQSSRVLMLDEKARGDANPIL
EECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCEEEEECCCCCCCCCEE
LIDEDDVMAGHAASVGRVDPIQLYYLMSRGIPKREAERLVIHGFLAPVVNELPIEGVKAQ
EECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LVEVIERKVR
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]