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The map label for this gene is sufS [H]

Identifier: 218906174

GI number: 218906174

Start: 4793100

End: 4794320

Strand: Reverse

Name: sufS [H]

Synonym: BCAH820_5086

Alternate gene names: 218906174

Gene position: 4794320-4793100 (Counterclockwise)

Preceding gene: 218906175

Following gene: 218906173

Centisome position: 90.41

GC content: 39.23

Gene sequence:

>1221_bases
ATGAATATTCATGAAATACGCAAACAGTTTCCAATTCTTGATCAAAAAGTGAACGGCAAACAACTTGTTTATTTCGATAG
TGCAGCAACTTCTCAAAAACCAATTCAAGTCATTGAAACGTTAGAACGTTATTATAAAGAATATAATTCTAACGTGCATC
GCGGTGTTCATACGCTCGGTACGAAAGCTACCGACGCGTATGAAGGTGCACGCGAGAAAGTTCGTAAGTTTATTAACGCG
AAATCAATGGAAGAGATTATTTTCACGCGCGGAACGACAACTGCATTAAATACAGTAGCGGCTAGCTATGGTCTTGAAAA
TGTAAAAGAAGGCGATGAAATCGTTATTTCTTACATGGAGCACCATAGTAACATCATTCCGTGGCAACAAGTTGCGAAGA
AAACTGGTGCAACTTTAAAATACCTTCCGCTTCAACCAGACGGTACAATTTCTTTAGAAGATGTTCGTCAAACAGTTACA
CCGAATACAAAAATCGTTTCTATTATGCAAGTTTCAAACGTGCTTGGAACGATTAACCCTGTAAAAGAAATCGGAGCAAT
CGCACATGAAAATGGCGCAATTATGGTCGTTGACGGTGCACAAAGTACACCTCACATGAAAGTGGATGTACAAGATTTGA
ACTGTGATTTCTACGCATTATCTGCTCATAAGATGTGCGGACCTACAGGCATCGGCGTATTATATGGTAAGAAAGAATTG
CTGAACAATATGGAGCCAATTGAATTTGGCGGTGAAATGATTGATTTCGTAGATTTACAAGAATCTACTTGGAAAGAGCT
TCCGTGGAAGTTTGAAGCGGGTACGCCGATTATCGGTAATGCAATCGGACTTGGTGCGGCAATTGATTTCTTAGAAGAAA
TCGGTCTTCATAATATTGAAAAGCATGAGCATGAATTAGCGCAGTACGCTTTAGAAAGACTATCAGAAGTAGATGGCGTT
ACAATTTATGGTCCAAAGCATCGCGCTGGTCTTGTTACATTTAATATTGAAGATGTACATCCTCACGATGTAGCGACAGT
ATTAGATGTAGAAGGTATTGCGGTTCGCGCAGGACATCACTGTGCACAACCGCTTATGAAGTGGCTGAAAGCTTCTTCAA
CAGCACGTGCGAGCTTCTATTTATATAATACAAAAGAAGAAATTGATACATTTGTTGAATCGCTAATCAAGACAAAGGAG
TATTTCACAAATGTCATTTAA

Upstream 100 bases:

>100_bases
GTTTAGTCATCCATGGATTCTTAGCACCTGTAGTTAATGAGCTTCCAATTGAAGGAGTAAAGGCACAGCTTGTTGAGGTA
ATTGAAAGGAAAGTTCGCTA

Downstream 100 bases:

>100_bases
TAATTTAGATACGTTATATCGTCAAGTTATTATGGATCATTACAAAAATCCTCGTAACCATGGCGTGTTAGAAGATAGTG
TTACCGTTAACTTGAACAAT

Product: cysteine desulfurase SufS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MNIHEIRKQFPILDQKVNGKQLVYFDSAATSQKPIQVIETLERYYKEYNSNVHRGVHTLGTKATDAYEGAREKVRKFINA
KSMEEIIFTRGTTTALNTVAASYGLENVKEGDEIVISYMEHHSNIIPWQQVAKKTGATLKYLPLQPDGTISLEDVRQTVT
PNTKIVSIMQVSNVLGTINPVKEIGAIAHENGAIMVVDGAQSTPHMKVDVQDLNCDFYALSAHKMCGPTGIGVLYGKKEL
LNNMEPIEFGGEMIDFVDLQESTWKELPWKFEAGTPIIGNAIGLGAAIDFLEEIGLHNIEKHEHELAQYALERLSEVDGV
TIYGPKHRAGLVTFNIEDVHPHDVATVLDVEGIAVRAGHHCAQPLMKWLKASSTARASFYLYNTKEEIDTFVESLIKTKE
YFTNVI

Sequences:

>Translated_406_residues
MNIHEIRKQFPILDQKVNGKQLVYFDSAATSQKPIQVIETLERYYKEYNSNVHRGVHTLGTKATDAYEGAREKVRKFINA
KSMEEIIFTRGTTTALNTVAASYGLENVKEGDEIVISYMEHHSNIIPWQQVAKKTGATLKYLPLQPDGTISLEDVRQTVT
PNTKIVSIMQVSNVLGTINPVKEIGAIAHENGAIMVVDGAQSTPHMKVDVQDLNCDFYALSAHKMCGPTGIGVLYGKKEL
LNNMEPIEFGGEMIDFVDLQESTWKELPWKFEAGTPIIGNAIGLGAAIDFLEEIGLHNIEKHEHELAQYALERLSEVDGV
TIYGPKHRAGLVTFNIEDVHPHDVATVLDVEGIAVRAGHHCAQPLMKWLKASSTARASFYLYNTKEEIDTFVESLIKTKE
YFTNVI
>Mature_406_residues
MNIHEIRKQFPILDQKVNGKQLVYFDSAATSQKPIQVIETLERYYKEYNSNVHRGVHTLGTKATDAYEGAREKVRKFINA
KSMEEIIFTRGTTTALNTVAASYGLENVKEGDEIVISYMEHHSNIIPWQQVAKKTGATLKYLPLQPDGTISLEDVRQTVT
PNTKIVSIMQVSNVLGTINPVKEIGAIAHENGAIMVVDGAQSTPHMKVDVQDLNCDFYALSAHKMCGPTGIGVLYGKKEL
LNNMEPIEFGGEMIDFVDLQESTWKELPWKFEAGTPIIGNAIGLGAAIDFLEEIGLHNIEKHEHELAQYALERLSEVDGV
TIYGPKHRAGLVTFNIEDVHPHDVATVLDVEGIAVRAGHHCAQPLMKWLKASSTARASFYLYNTKEEIDTFVESLIKTKE
YFTNVI

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Homo sapiens, GI32307132, Length=390, Percent_Identity=26.6666666666667, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI156713448, Length=322, Percent_Identity=29.1925465838509, Blast_Score=89, Evalue=8e-18,
Organism=Escherichia coli, GI1787970, Length=396, Percent_Identity=49.2424242424242, Blast_Score=419, Evalue=1e-118,
Organism=Escherichia coli, GI1789175, Length=404, Percent_Identity=40.0990099009901, Blast_Score=311, Evalue=6e-86,
Organism=Escherichia coli, GI48994898, Length=389, Percent_Identity=24.1645244215938, Blast_Score=104, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI25143064, Length=231, Percent_Identity=30.7359307359307, Blast_Score=120, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI193211090, Length=417, Percent_Identity=23.9808153477218, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17533177, Length=334, Percent_Identity=24.251497005988, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6319831, Length=390, Percent_Identity=27.6923076923077, Blast_Score=139, Evalue=8e-34,
Organism=Drosophila melanogaster, GI20129463, Length=412, Percent_Identity=27.6699029126214, Blast_Score=132, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 45270; Mature: 45270

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS00595 AA_TRANSFER_CLASS_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIHEIRKQFPILDQKVNGKQLVYFDSAATSQKPIQVIETLERYYKEYNSNVHRGVHTLG
CCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHC
TKATDAYEGAREKVRKFINAKSMEEIIFTRGTTTALNTVAASYGLENVKEGDEIVISYME
CCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHCHHHCCCCHHHHHHHHH
HHSNIIPWQQVAKKTGATLKYLPLQPDGTISLEDVRQTVTPNTKIVSIMQVSNVLGTINP
HCCCCCCHHHHHHHHCCEEEEEECCCCCCEEHHHHHHHHCCCCCEEHHHHHHHHHHCCCH
VKEIGAIAHENGAIMVVDGAQSTPHMKVDVQDLNCDFYALSAHKMCGPTGIGVLYGKKEL
HHHHHHHEECCCEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCEEEECCHHH
LNNMEPIEFGGEMIDFVDLQESTWKELPWKFEAGTPIIGNAIGLGAAIDFLEEIGLHNIE
HCCCCCHHHCCCEEEEEECCHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHH
KHEHELAQYALERLSEVDGVTIYGPKHRAGLVTFNIEDVHPHDVATVLDVEGIAVRAGHH
HHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCCCCHHEEEECCCEEEECCHH
CAQPLMKWLKASSTARASFYLYNTKEEIDTFVESLIKTKEYFTNVI
HHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIHEIRKQFPILDQKVNGKQLVYFDSAATSQKPIQVIETLERYYKEYNSNVHRGVHTLG
CCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHC
TKATDAYEGAREKVRKFINAKSMEEIIFTRGTTTALNTVAASYGLENVKEGDEIVISYME
CCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHCHHHCCCCHHHHHHHHH
HHSNIIPWQQVAKKTGATLKYLPLQPDGTISLEDVRQTVTPNTKIVSIMQVSNVLGTINP
HCCCCCCHHHHHHHHCCEEEEEECCCCCCEEHHHHHHHHCCCCCEEHHHHHHHHHHCCCH
VKEIGAIAHENGAIMVVDGAQSTPHMKVDVQDLNCDFYALSAHKMCGPTGIGVLYGKKEL
HHHHHHHEECCCEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCEEEECCHHH
LNNMEPIEFGGEMIDFVDLQESTWKELPWKFEAGTPIIGNAIGLGAAIDFLEEIGLHNIE
HCCCCCHHHCCCEEEEEECCHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHH
KHEHELAQYALERLSEVDGVTIYGPKHRAGLVTFNIEDVHPHDVATVLDVEGIAVRAGHH
HHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCCCCHHEEEECCCEEEECCHH
CAQPLMKWLKASSTARASFYLYNTKEEIDTFVESLIKTKEYFTNVI
HHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]