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The map label for this gene is tnpB1 [H]

Identifier: 218905654

GI number: 218905654

Start: 4294165

End: 4296078

Strand: Reverse

Name: tnpB1 [H]

Synonym: BCAH820_4539

Alternate gene names: 218905654

Gene position: 4296078-4294165 (Counterclockwise)

Preceding gene: 218905655

Following gene: 218905653

Centisome position: 81.02

GC content: 33.65

Gene sequence:

>1914_bases
ATGAAATTTCCAAGCGTTGCAACAAATCGAAAGCTCGTCACTAACACAGAGATTAATAAAAAAATAGCGGATATGACTAG
TGTCTTACAAGGGTTTTGGTCAGCAGATAGATGGGATATAAGAATTTGCCCACATCCTAGTGCGATAGAGTTAAGTAAGA
ATCCTTCGTTAAAAAATCGGTGGGTAAATTTTGATAAAGTAGAAAACATCTGGTTAAAAACAGAATTAAAATATTTTTAT
TATGTTCTCTTAAATAATGGAACTTGGAGTGCAAAAACTGTTTGGATTAGAAAAGGAACAGTGATAAGTCGAATGTTGGG
GTTTTTAAATTTAAAATATCCCGATATTACCTCTATAACTGAAGTGCCTATAGTAAAAGCTTTGACGGAATACCGAACTT
ACTTAGTAGAACAAGGGATAAAATCTACGACTAAAAATTACAAGCTTGATATAAATCAAAATAAAATTTCTGTGCAAGCG
AACTCCTACTACGTTACTAATTTAAAACAGTTTATGGAGTTCTATGAGGATTTCTATTTTGATGGTGAAGAATGGGATAA
AGATGTTTGGGATCTAAGAAAACTTTCATTGCCGGAAGATAAGATAAATCCAACGTCCTACGAATATACAATCAATTTCA
AGGGTTTTGAAAATGATTATTTTAAAGAAATCGTCAAGCGATATTGTAAGTTAATGTTAAATACACGTAGCTTTTCCCAT
GTAGTTGATATGGCGTCAAAATTAAGAGAGTTTTTTAATTTTATAAATACAAATTGTGAAGGCATACGAAGGATTCATCA
ATTAACTAGGAATGAAGTTGAGCAATATTTAAATGAAATTAATTTAAAAGGTTTAAAACCTAGTACTGCGACTGGACGAA
TATCTACTTTAGAAGTTTTTTTCTCTACACTTCAAAGGTTTGATTGGAAGGATTCGCCTTCCCAAATCCTTATCTTTCGA
GAAGATTATCCTAAAGTGCCGAAGGCACAACCACGTTATATAGATGAACATGTCCTTGAACAATTAAATGTGAAATTAGA
TAAATTGGAACCTTATATGGCTGCAATGGTTATGGTACTTCAAGAATGCGGAATGCGTATCGGTGAACTTTGTACATTGA
AAAAAGGGAGTGTCATAACAGATAAAGAAGGGGATTGCTTTTTAAAGTATTATCAGTGGAAAATGAAGAAAGAACATACC
ATTCCTATTTCTAAAGAAATTGCTGCATTGATATTGGTTCAAGAGCAAAGAGTGGCTGATGAACTTGACGATGGATGTGT
ATATGTATTTCCACGGAAAGATGGTTCTCCATTGAAGCAAGATACCTTTAGAGTTAAATTAAATAAATTAGCTTATGAAG
AAAAGATAACGGATAATAAAGGAGAGATTTTCCGATTTCATGCTCATGCCTTTCGGCATACGGTTGGCACTAGAATGATA
AACAACGGAGTGCCACAGCATATTGTTCAAAAATTCTTAGGGCATGAATCACCAGAAATGACTGCAAGATATGCCCATAT
TTTTGATGAAACTCTAAAGAAAGAGTTCATAAAGTTTAAGGAAACTTTGGTGACGAATAACGGTAGCATTCTGGATTTAA
CCGAAGAAAATACTGAAGCTGACAATACAGACCTTCAATGGTTTAAAAAGAATATCAATTCACAAGCACTTCCTAATGGC
TATTGTCGTTTACCAGTAATTGCGGGACCGTGTCCTCACGCAAATGCTTGTTTAGATTGTACGAACTTCTGTACAAGTAA
ACAATTTCTAAATGAACATGAAGAGCACTTAGACCGAACTAAAGAAATATTAAATAGGGCTAAACAGAACCAATGGCAGC
GTCAGGTTGAAACTAATGAACGTGTTAAAAATAGATTAGAGCAGATTATTCATTCGTTAAAGGAGACGAATTAA

Upstream 100 bases:

>100_bases
TGCACATGTACAAACAACACTTGATACATACGTTCATCTTTCTGATCAAGATATGAAAAATGAATATAAAGCGTATCTCC
AAGGGAGAGAAACATAAAAA

Downstream 100 bases:

>100_bases
GATGACTAGACAGAGTAACACAACTGCGATAATTCAACTATCAAAAGAAAAGTCGGAAAAAACAAGAATCAGAGTTGAAA
AGACAATTTCAGAGATGGCA

Product: transposase B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 637; Mature: 637

Protein sequence:

>637_residues
MKFPSVATNRKLVTNTEINKKIADMTSVLQGFWSADRWDIRICPHPSAIELSKNPSLKNRWVNFDKVENIWLKTELKYFY
YVLLNNGTWSAKTVWIRKGTVISRMLGFLNLKYPDITSITEVPIVKALTEYRTYLVEQGIKSTTKNYKLDINQNKISVQA
NSYYVTNLKQFMEFYEDFYFDGEEWDKDVWDLRKLSLPEDKINPTSYEYTINFKGFENDYFKEIVKRYCKLMLNTRSFSH
VVDMASKLREFFNFINTNCEGIRRIHQLTRNEVEQYLNEINLKGLKPSTATGRISTLEVFFSTLQRFDWKDSPSQILIFR
EDYPKVPKAQPRYIDEHVLEQLNVKLDKLEPYMAAMVMVLQECGMRIGELCTLKKGSVITDKEGDCFLKYYQWKMKKEHT
IPISKEIAALILVQEQRVADELDDGCVYVFPRKDGSPLKQDTFRVKLNKLAYEEKITDNKGEIFRFHAHAFRHTVGTRMI
NNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFIKFKETLVTNNGSILDLTEENTEADNTDLQWFKKNINSQALPNG
YCRLPVIAGPCPHANACLDCTNFCTSKQFLNEHEEHLDRTKEILNRAKQNQWQRQVETNERVKNRLEQIIHSLKETN

Sequences:

>Translated_637_residues
MKFPSVATNRKLVTNTEINKKIADMTSVLQGFWSADRWDIRICPHPSAIELSKNPSLKNRWVNFDKVENIWLKTELKYFY
YVLLNNGTWSAKTVWIRKGTVISRMLGFLNLKYPDITSITEVPIVKALTEYRTYLVEQGIKSTTKNYKLDINQNKISVQA
NSYYVTNLKQFMEFYEDFYFDGEEWDKDVWDLRKLSLPEDKINPTSYEYTINFKGFENDYFKEIVKRYCKLMLNTRSFSH
VVDMASKLREFFNFINTNCEGIRRIHQLTRNEVEQYLNEINLKGLKPSTATGRISTLEVFFSTLQRFDWKDSPSQILIFR
EDYPKVPKAQPRYIDEHVLEQLNVKLDKLEPYMAAMVMVLQECGMRIGELCTLKKGSVITDKEGDCFLKYYQWKMKKEHT
IPISKEIAALILVQEQRVADELDDGCVYVFPRKDGSPLKQDTFRVKLNKLAYEEKITDNKGEIFRFHAHAFRHTVGTRMI
NNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFIKFKETLVTNNGSILDLTEENTEADNTDLQWFKKNINSQALPNG
YCRLPVIAGPCPHANACLDCTNFCTSKQFLNEHEEHLDRTKEILNRAKQNQWQRQVETNERVKNRLEQIIHSLKETN
>Mature_637_residues
MKFPSVATNRKLVTNTEINKKIADMTSVLQGFWSADRWDIRICPHPSAIELSKNPSLKNRWVNFDKVENIWLKTELKYFY
YVLLNNGTWSAKTVWIRKGTVISRMLGFLNLKYPDITSITEVPIVKALTEYRTYLVEQGIKSTTKNYKLDINQNKISVQA
NSYYVTNLKQFMEFYEDFYFDGEEWDKDVWDLRKLSLPEDKINPTSYEYTINFKGFENDYFKEIVKRYCKLMLNTRSFSH
VVDMASKLREFFNFINTNCEGIRRIHQLTRNEVEQYLNEINLKGLKPSTATGRISTLEVFFSTLQRFDWKDSPSQILIFR
EDYPKVPKAQPRYIDEHVLEQLNVKLDKLEPYMAAMVMVLQECGMRIGELCTLKKGSVITDKEGDCFLKYYQWKMKKEHT
IPISKEIAALILVQEQRVADELDDGCVYVFPRKDGSPLKQDTFRVKLNKLAYEEKITDNKGEIFRFHAHAFRHTVGTRMI
NNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFIKFKETLVTNNGSILDLTEENTEADNTDLQWFKKNINSQALPNG
YCRLPVIAGPCPHANACLDCTNFCTSKQFLNEHEEHLDRTKEILNRAKQNQWQRQVETNERVKNRLEQIIHSLKETN

Specific function: One of three proteins encoded by transposon Tn554 required for its transposition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 74824; Mature: 74824

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFPSVATNRKLVTNTEINKKIADMTSVLQGFWSADRWDIRICPHPSAIELSKNPSLKNR
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCHHHH
WVNFDKVENIWLKTELKYFYYVLLNNGTWSAKTVWIRKGTVISRMLGFLNLKYPDITSIT
CCCHHHHHCCHHEEEEEEEEEEEEECCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCH
EVPIVKALTEYRTYLVEQGIKSTTKNYKLDINQNKISVQANSYYVTNLKQFMEFYEDFYF
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCEEHHHHHHHHHHHHHHCC
DGEEWDKDVWDLRKLSLPEDKINPTSYEYTINFKGFENDYFKEIVKRYCKLMLNTRSFSH
CCHHHCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHH
VVDMASKLREFFNFINTNCEGIRRIHQLTRNEVEQYLNEINLKGLKPSTATGRISTLEVF
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
FSTLQRFDWKDSPSQILIFREDYPKVPKAQPRYIDEHVLEQLNVKLDKLEPYMAAMVMVL
HHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHH
QECGMRIGELCTLKKGSVITDKEGDCFLKYYQWKMKKEHTIPISKEIAALILVQEQRVAD
HHHCHHHHHHHCCCCCCEEECCCCCEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ELDDGCVYVFPRKDGSPLKQDTFRVKLNKLAYEEKITDNKGEIFRFHAHAFRHTVGTRMI
HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHH
NNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFIKFKETLVTNNGSILDLTEENTEA
HCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
DNTDLQWFKKNINSQALPNGYCRLPVIAGPCPHANACLDCTNFCTSKQFLNEHEEHLDRT
CCCHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KEILNRAKQNQWQRQVETNERVKNRLEQIIHSLKETN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFPSVATNRKLVTNTEINKKIADMTSVLQGFWSADRWDIRICPHPSAIELSKNPSLKNR
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCHHHH
WVNFDKVENIWLKTELKYFYYVLLNNGTWSAKTVWIRKGTVISRMLGFLNLKYPDITSIT
CCCHHHHHCCHHEEEEEEEEEEEEECCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCH
EVPIVKALTEYRTYLVEQGIKSTTKNYKLDINQNKISVQANSYYVTNLKQFMEFYEDFYF
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCEEHHHHHHHHHHHHHHCC
DGEEWDKDVWDLRKLSLPEDKINPTSYEYTINFKGFENDYFKEIVKRYCKLMLNTRSFSH
CCHHHCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHH
VVDMASKLREFFNFINTNCEGIRRIHQLTRNEVEQYLNEINLKGLKPSTATGRISTLEVF
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
FSTLQRFDWKDSPSQILIFREDYPKVPKAQPRYIDEHVLEQLNVKLDKLEPYMAAMVMVL
HHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHH
QECGMRIGELCTLKKGSVITDKEGDCFLKYYQWKMKKEHTIPISKEIAALILVQEQRVAD
HHHCHHHHHHHCCCCCCEEECCCCCEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
ELDDGCVYVFPRKDGSPLKQDTFRVKLNKLAYEEKITDNKGEIFRFHAHAFRHTVGTRMI
HCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHH
NNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFIKFKETLVTNNGSILDLTEENTEA
HCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
DNTDLQWFKKNINSQALPNGYCRLPVIAGPCPHANACLDCTNFCTSKQFLNEHEEHLDRT
CCCHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KEILNRAKQNQWQRQVETNERVKNRLEQIIHSLKETN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]