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The map label for this gene is tnpA1 [H]

Identifier: 218905655

GI number: 218905655

Start: 4296082

End: 4297167

Strand: Reverse

Name: tnpA1 [H]

Synonym: BCAH820_4540

Alternate gene names: 218905655

Gene position: 4297167-4296082 (Counterclockwise)

Preceding gene: 218905656

Following gene: 218905654

Centisome position: 81.04

GC content: 33.15

Gene sequence:

>1086_bases
ATGAAAGTTCAAAAAGTAGTTGTGGAGGAAAAATCATATCCATTATACATACTACTAGACAAAAAAATTGAAGTGGTAGA
ACCAGTTAAGAAATATATAAAGTACTTGGATAATACAGGGAAAGCGCCAAATACGATTAAAACATATTGTTATCATCTCA
AGCTGTTTTATGAATTTATGAGCCAGAGAGGAATTGGATTAGAAGATTTAAAATTCGAGGAAATGTCAAACTTTGTGGGA
TGGTTAAGAAATCCAACGGGGGATGTAAAGGTAATAGATTTACAACCAAAGAAGGCTAAAAGAGAAGAAACATCTGTTAA
TGCCATACTTAATGCTGTAACTAGTTTCTTAGAGTATTTAAATCGTACAGGAGATTTTAAGGCTATAGATATGACTAAAG
AAGCAAGGGGAAGAAATTTCAAGGGATTTCTTTACCATATTTCTAAAGGTAAATCTTATCAAAAAAACATTTTAAAGCTT
AGGGTCAAAAAGAAAATTGTACAAGTATTAGAACACGAACAAGTTAAAGCAATAATCGATGCGTGTCATACAAAAAGAGA
TAAGTTACTTATTATGCTTATGTATGAAGGAGGACTTCGGGTAGGAGAGGTATTATCCCTTCGTATCGAAGATATTTCTA
CTTGGGATAATCAGATTAATATCACGCCAAGAGATCACAACGAAAATGGGGCTTATATTAAGCTTAGAAAAGAACGAAAA
ATCGATGTTAGCAAGGAATTAATGGCTTTATACACCGATTATTTAGTTCATGAATATGGGGAAGATTTGGAGCATGATTA
TATATTTATAAATCTCAAAGAATCTTATTTTGGGAAACCTCTAAAATATCAAAGTGTATTAGATCTTATAAGGCGATTGG
TGAAACGGACAGGGATTACCTTCACTGCTCATATGTTACGTCATACGCATGCCACAGAACTCATTAGAAGTGGATGGGAT
GCTGCTTACGTACAAAAAAGGTTAGGTCATGCACATGTACAAACAACACTTGATACATACGTTCATCTTTCTGATCAAGA
TATGAAAAATGAATATAAAGCGTATCTCCAAGGGAGAGAAACATAA

Upstream 100 bases:

>100_bases
AAGTACTCAAAGTTTAGGATTTTTTAAATTCAATACTTTAACTGATGAATATATATAGGTATTATTTAAAGTAGTTAAAG
TATTTAAAGGTGGTGAAGAA

Downstream 100 bases:

>100_bases
AAAATGAAATTTCCAAGCGTTGCAACAAATCGAAAGCTCGTCACTAACACAGAGATTAATAAAAAAATAGCGGATATGAC
TAGTGTCTTACAAGGGTTTT

Product: transposase A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKVQKVVVEEKSYPLYILLDKKIEVVEPVKKYIKYLDNTGKAPNTIKTYCYHLKLFYEFMSQRGIGLEDLKFEEMSNFVG
WLRNPTGDVKVIDLQPKKAKREETSVNAILNAVTSFLEYLNRTGDFKAIDMTKEARGRNFKGFLYHISKGKSYQKNILKL
RVKKKIVQVLEHEQVKAIIDACHTKRDKLLIMLMYEGGLRVGEVLSLRIEDISTWDNQINITPRDHNENGAYIKLRKERK
IDVSKELMALYTDYLVHEYGEDLEHDYIFINLKESYFGKPLKYQSVLDLIRRLVKRTGITFTAHMLRHTHATELIRSGWD
AAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKAYLQGRET

Sequences:

>Translated_361_residues
MKVQKVVVEEKSYPLYILLDKKIEVVEPVKKYIKYLDNTGKAPNTIKTYCYHLKLFYEFMSQRGIGLEDLKFEEMSNFVG
WLRNPTGDVKVIDLQPKKAKREETSVNAILNAVTSFLEYLNRTGDFKAIDMTKEARGRNFKGFLYHISKGKSYQKNILKL
RVKKKIVQVLEHEQVKAIIDACHTKRDKLLIMLMYEGGLRVGEVLSLRIEDISTWDNQINITPRDHNENGAYIKLRKERK
IDVSKELMALYTDYLVHEYGEDLEHDYIFINLKESYFGKPLKYQSVLDLIRRLVKRTGITFTAHMLRHTHATELIRSGWD
AAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKAYLQGRET
>Mature_361_residues
MKVQKVVVEEKSYPLYILLDKKIEVVEPVKKYIKYLDNTGKAPNTIKTYCYHLKLFYEFMSQRGIGLEDLKFEEMSNFVG
WLRNPTGDVKVIDLQPKKAKREETSVNAILNAVTSFLEYLNRTGDFKAIDMTKEARGRNFKGFLYHISKGKSYQKNILKL
RVKKKIVQVLEHEQVKAIIDACHTKRDKLLIMLMYEGGLRVGEVLSLRIEDISTWDNQINITPRDHNENGAYIKLRKERK
IDVSKELMALYTDYLVHEYGEDLEHDYIFINLKESYFGKPLKYQSVLDLIRRLVKRTGITFTAHMLRHTHATELIRSGWD
AAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKAYLQGRET

Specific function: One of three proteins encoded by transposon Tn554 required for its transposition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=324, Percent_Identity=24.3827160493827, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42323; Mature: 42323

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS00399 SUCCINYL_COA_LIG_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVQKVVVEEKSYPLYILLDKKIEVVEPVKKYIKYLDNTGKAPNTIKTYCYHLKLFYEFM
CCCHHEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
SQRGIGLEDLKFEEMSNFVGWLRNPTGDVKVIDLQPKKAKREETSVNAILNAVTSFLEYL
HHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
NRTGDFKAIDMTKEARGRNFKGFLYHISKGKSYQKNILKLRVKKKIVQVLEHEQVKAIID
HCCCCEEEEECCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACHTKRDKLLIMLMYEGGLRVGEVLSLRIEDISTWDNQINITPRDHNENGAYIKLRKERK
HHHCCCCCEEEEEEECCCCCCCHHHEEEEHHHCCCCCEEEECCCCCCCCCCEEEEECCCC
IDVSKELMALYTDYLVHEYGEDLEHDYIFINLKESYFGKPLKYQSVLDLIRRLVKRTGIT
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHCCCH
FTAHMLRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKAYLQGRE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHEEECCHHHHHHHHHHHCCCC
T
C
>Mature Secondary Structure
MKVQKVVVEEKSYPLYILLDKKIEVVEPVKKYIKYLDNTGKAPNTIKTYCYHLKLFYEFM
CCCHHEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
SQRGIGLEDLKFEEMSNFVGWLRNPTGDVKVIDLQPKKAKREETSVNAILNAVTSFLEYL
HHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
NRTGDFKAIDMTKEARGRNFKGFLYHISKGKSYQKNILKLRVKKKIVQVLEHEQVKAIID
HCCCCEEEEECCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACHTKRDKLLIMLMYEGGLRVGEVLSLRIEDISTWDNQINITPRDHNENGAYIKLRKERK
HHHCCCCCEEEEEEECCCCCCCHHHEEEEHHHCCCCCEEEECCCCCCCCCCEEEEECCCC
IDVSKELMALYTDYLVHEYGEDLEHDYIFINLKESYFGKPLKYQSVLDLIRRLVKRTGIT
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHCCCH
FTAHMLRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKAYLQGRE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHEEECCHHHHHHHHHHHCCCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]