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The map label for this gene is yndE [H]

Identifier: 218904257

GI number: 218904257

Start: 2971398

End: 2972480

Strand: Reverse

Name: yndE [H]

Synonym: BCAH820_3141

Alternate gene names: 218904257

Gene position: 2972480-2971398 (Counterclockwise)

Preceding gene: 218904258

Following gene: 218904256

Centisome position: 56.06

GC content: 32.04

Gene sequence:

>1083_bases
ATGAAACAGGTCCCAATTGAGTATCAAGTCTCTCCATTTATGGTATTTTTTTTAATTATTACTATACAGATGGGGGTTGG
TATGCTTGGTTTTGAAAGGATTAGTGCAAAATTAGTTGGAAATGATGCGTGGATAAGTACGCTACTTTTTGGAATATCTG
TTAATCTTATGATTTGGATCATATATCAGATTTTAAATCAGGGTAATGGAGATATCATTGCAATCAATCAAGACGTACTT
GGAAAATGGATTGGTGGATTGTTCAACTTCATTTTTTTATCTTATATTGTATTGTTAGGTGCAACAACACTACATACTTA
TATCGAAGTAGTACATGTTTGGATGTTTCCTTCCATTTCATCTTGGATTATAGCAGGGGCTTTTTTGGGTCTATGTTATT
ACATTGTGACTGGAGGATTTCGTGTAGTTGCTGGAATCGGCTTCTTTGGAATCGTTATCCCAAGCATTCTAATCTTCACA
TTTTTTTATCCTTTGCAGTATGCAGATTTCCAAAATTTATTTCCAATTGCACAGCATTCATTCCTGGAAATTATGAAAGG
AATGAAAGGAAATATGTTTAGTTTTTTTGGATTTGAAATGTTATTGTTATACTACCCATTTATTAAAAAGGCAAGAACGT
CTCAAAAATATGCGCACTATGCAAATTTAGTAACGACTATTGTCTACACATACCTTATGATTTTAACTCTTGCGTTTTTT
AGTGAAAAACAACTAGCGAGCGCGATATGGGCATATTTAAGCATGATTAAAATTATACAATTTCCCTTTATAGAGCGGTT
TGAATACATTATTGTTTCTGTTTGGGCTTTTTTTATATTACCCAATGTTTCCTTTACATTATGGGGAGTAAGTCGTGGTA
TAAAAGAGGCACTGGGAATAAAGCAAAAATATGTTTTGCCAGTTATCATCCTGTTCATCTTTGTTTTATCATTTTTCTTG
AATAACCGTAATAAAATTAACTTATTAAATACTTGGACAGGTCAAATTGGCTTTGTATATATATATGTATACCTACCTAT
ATTATGGCTAATTCAAACCGCCAAAATAAAGTTAAGGAGATAA

Upstream 100 bases:

>100_bases
GGTCTAAACAGCGTTTTCGTTTTAATCCAGAAGAGGTAGAGAAAAATAAAATCAAATCACGAAATGATTTTGATGATTGA
AATTAACAGGGAGGAGCATT

Downstream 100 bases:

>100_bases
ACATGAAGCGATGGATACTTTTCCTTATAGTAAGTGTCTTCTTAATAGGTTGTGCTAAAACGAAAATTGTGGATGACATT
GACTTAGTTCAAGTTGCGGC

Product: spore germination protein, GerB family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MKQVPIEYQVSPFMVFFLIITIQMGVGMLGFERISAKLVGNDAWISTLLFGISVNLMIWIIYQILNQGNGDIIAINQDVL
GKWIGGLFNFIFLSYIVLLGATTLHTYIEVVHVWMFPSISSWIIAGAFLGLCYYIVTGGFRVVAGIGFFGIVIPSILIFT
FFYPLQYADFQNLFPIAQHSFLEIMKGMKGNMFSFFGFEMLLLYYPFIKKARTSQKYAHYANLVTTIVYTYLMILTLAFF
SEKQLASAIWAYLSMIKIIQFPFIERFEYIIVSVWAFFILPNVSFTLWGVSRGIKEALGIKQKYVLPVIILFIFVLSFFL
NNRNKINLLNTWTGQIGFVYIYVYLPILWLIQTAKIKLRR

Sequences:

>Translated_360_residues
MKQVPIEYQVSPFMVFFLIITIQMGVGMLGFERISAKLVGNDAWISTLLFGISVNLMIWIIYQILNQGNGDIIAINQDVL
GKWIGGLFNFIFLSYIVLLGATTLHTYIEVVHVWMFPSISSWIIAGAFLGLCYYIVTGGFRVVAGIGFFGIVIPSILIFT
FFYPLQYADFQNLFPIAQHSFLEIMKGMKGNMFSFFGFEMLLLYYPFIKKARTSQKYAHYANLVTTIVYTYLMILTLAFF
SEKQLASAIWAYLSMIKIIQFPFIERFEYIIVSVWAFFILPNVSFTLWGVSRGIKEALGIKQKYVLPVIILFIFVLSFFL
NNRNKINLLNTWTGQIGFVYIYVYLPILWLIQTAKIKLRR
>Mature_360_residues
MKQVPIEYQVSPFMVFFLIITIQMGVGMLGFERISAKLVGNDAWISTLLFGISVNLMIWIIYQILNQGNGDIIAINQDVL
GKWIGGLFNFIFLSYIVLLGATTLHTYIEVVHVWMFPSISSWIIAGAFLGLCYYIVTGGFRVVAGIGFFGIVIPSILIFT
FFYPLQYADFQNLFPIAQHSFLEIMKGMKGNMFSFFGFEMLLLYYPFIKKARTSQKYAHYANLVTTIVYTYLMILTLAFF
SEKQLASAIWAYLSMIKIIQFPFIERFEYIIVSVWAFFILPNVSFTLWGVSRGIKEALGIKQKYVLPVIILFIFVLSFFL
NNRNKINLLNTWTGQIGFVYIYVYLPILWLIQTAKIKLRR

Specific function: Involved in the germinative response to L-alanine. Could be an amino acid transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004761 [H]

Pfam domain/function: PF03845 Spore_permease [H]

EC number: NA

Molecular weight: Translated: 41534; Mature: 41534

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVPIEYQVSPFMVFFLIITIQMGVGMLGFERISAKLVGNDAWISTLLFGISVNLMIWI
CCCCCCEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IYQILNQGNGDIIAINQDVLGKWIGGLFNFIFLSYIVLLGATTLHTYIEVVHVWMFPSIS
HHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
SWIIAGAFLGLCYYIVTGGFRVVAGIGFFGIVIPSILIFTFFYPLQYADFQNLFPIAQHS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
FLEIMKGMKGNMFSFFGFEMLLLYYPFIKKARTSQKYAHYANLVTTIVYTYLMILTLAFF
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEKQLASAIWAYLSMIKIIQFPFIERFEYIIVSVWAFFILPNVSFTLWGVSRGIKEALGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCC
KQKYVLPVIILFIFVLSFFLNNRNKINLLNTWTGQIGFVYIYVYLPILWLIQTAKIKLRR
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKQVPIEYQVSPFMVFFLIITIQMGVGMLGFERISAKLVGNDAWISTLLFGISVNLMIWI
CCCCCCEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
IYQILNQGNGDIIAINQDVLGKWIGGLFNFIFLSYIVLLGATTLHTYIEVVHVWMFPSIS
HHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
SWIIAGAFLGLCYYIVTGGFRVVAGIGFFGIVIPSILIFTFFYPLQYADFQNLFPIAQHS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
FLEIMKGMKGNMFSFFGFEMLLLYYPFIKKARTSQKYAHYANLVTTIVYTYLMILTLAFF
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEKQLASAIWAYLSMIKIIQFPFIERFEYIIVSVWAFFILPNVSFTLWGVSRGIKEALGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCC
KQKYVLPVIILFIFVLSFFLNNRNKINLLNTWTGQIGFVYIYVYLPILWLIQTAKIKLRR
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]