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The map label for this gene is yfkR [H]

Identifier: 218904256

GI number: 218904256

Start: 2970316

End: 2971395

Strand: Reverse

Name: yfkR [H]

Synonym: BCAH820_3140

Alternate gene names: 218904256

Gene position: 2971395-2970316 (Counterclockwise)

Preceding gene: 218904257

Following gene: 218904252

Centisome position: 56.04

GC content: 31.94

Gene sequence:

>1080_bases
ATGAAGCGATGGATACTTTTCCTTATAGTAAGTGTCTTCTTAATAGGTTGTGCTAAAACGAAAATTGTGGATGACATTGA
CTTAGTTCAAGTTGCGGCATATGATACCGAAGCAAAAGGTAAGCTAAAAGGAACCTTTGCGATTTCAGCTTATAAAGGAG
GCGGGGAAGGTGAAACGAAAATCTATTCAGCATCAGGCCAGACTGGTAGAGAAGTTCTTGCAAGAGCATCCGAAAAATCT
TCTGGACCTCTAGAGTTGGGGCAATTGCGTGTTATTATATTTAATGAAAAAATAATTGATAAGGGAATGCAGGAAATTTT
AGAGACTTTGAATCGAAATCCTAGTGTAGGAAATGCAATTTATTTAGCAATTACAAATGTAAAAGGGGAATCACTATTAA
AGGGGAATTATTCTGAAGAAAAAGAAATTGCTTCCTATCTATCCTCTTTACTGGAGCAAAATATGGATAATGGAACGCAA
CCAAAAACAAATTTTTTTATGTTTTTAAACCAACTTAATGATGATGCGAGAGATTCATATTTACCGATAATATCTAAAAA
AGGTAATGTGTTGGAGTTAGATGGAATAGCACTTTTTAAAAGATGTAAAATGGTTGATAAAGTAAACCCTAAAGATTTAT
TTGTATTTAAATTGTTGACAGATAATTTTAAACAAGGTACATACCAATTCAAACTACCTGGTTCCTCAAATACTTACGCC
ACGATAGAGAATATAAAAGCTAGAACAAAATATAAGATGGAGGGGAATAGTAAGCATCCATTCGTAAATGCTCATATTCA
AGTTAAAGCTGAAATTCAAGAATTTACAAAAACAAAAAATCTAGATAATCCTAAAGAAATAAAAAAATTAGAAAAAATTA
TGGAAAAAGAAATAGAAAAAAAAGCAACTACATTGATAAAGAGATTTATTAAAAAAGACACAGATCCTATAGGACTTAGA
AAGCTTGGTAGAACTCACGTAAGAAAATGGAACAGTCAAGAATGGGAAGAATCCTATAAACATTTACGTTTTCGTGTAAC
AGCTGATGTAAAAGTAACCCAATCTGGTGTTACAGAATAA

Upstream 100 bases:

>100_bases
TAAATACTTGGACAGGTCAAATTGGCTTTGTATATATATATGTATACCTACCTATATTATGGCTAATTCAAACCGCCAAA
ATAAAGTTAAGGAGATAAAC

Downstream 100 bases:

>100_bases
ATCAAATAAGATATGGAAAATTTTAATAAAAAAATATAGTCTCGCAGGAGATTAGGGAGAAGAGAAACGATTAACAAAGA
ATTTCATAAACATTAAGATG

Product: spore germination protein, GerC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MKRWILFLIVSVFLIGCAKTKIVDDIDLVQVAAYDTEAKGKLKGTFAISAYKGGGEGETKIYSASGQTGREVLARASEKS
SGPLELGQLRVIIFNEKIIDKGMQEILETLNRNPSVGNAIYLAITNVKGESLLKGNYSEEKEIASYLSSLLEQNMDNGTQ
PKTNFFMFLNQLNDDARDSYLPIISKKGNVLELDGIALFKRCKMVDKVNPKDLFVFKLLTDNFKQGTYQFKLPGSSNTYA
TIENIKARTKYKMEGNSKHPFVNAHIQVKAEIQEFTKTKNLDNPKEIKKLEKIMEKEIEKKATTLIKRFIKKDTDPIGLR
KLGRTHVRKWNSQEWEESYKHLRFRVTADVKVTQSGVTE

Sequences:

>Translated_359_residues
MKRWILFLIVSVFLIGCAKTKIVDDIDLVQVAAYDTEAKGKLKGTFAISAYKGGGEGETKIYSASGQTGREVLARASEKS
SGPLELGQLRVIIFNEKIIDKGMQEILETLNRNPSVGNAIYLAITNVKGESLLKGNYSEEKEIASYLSSLLEQNMDNGTQ
PKTNFFMFLNQLNDDARDSYLPIISKKGNVLELDGIALFKRCKMVDKVNPKDLFVFKLLTDNFKQGTYQFKLPGSSNTYA
TIENIKARTKYKMEGNSKHPFVNAHIQVKAEIQEFTKTKNLDNPKEIKKLEKIMEKEIEKKATTLIKRFIKKDTDPIGLR
KLGRTHVRKWNSQEWEESYKHLRFRVTADVKVTQSGVTE
>Mature_359_residues
MKRWILFLIVSVFLIGCAKTKIVDDIDLVQVAAYDTEAKGKLKGTFAISAYKGGGEGETKIYSASGQTGREVLARASEKS
SGPLELGQLRVIIFNEKIIDKGMQEILETLNRNPSVGNAIYLAITNVKGESLLKGNYSEEKEIASYLSSLLEQNMDNGTQ
PKTNFFMFLNQLNDDARDSYLPIISKKGNVLELDGIALFKRCKMVDKVNPKDLFVFKLLTDNFKQGTYQFKLPGSSNTYA
TIENIKARTKYKMEGNSKHPFVNAHIQVKAEIQEFTKTKNLDNPKEIKKLEKIMEKEIEKKATTLIKRFIKKDTDPIGLR
KLGRTHVRKWNSQEWEESYKHLRFRVTADVKVTQSGVTE

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 40692; Mature: 40692

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRWILFLIVSVFLIGCAKTKIVDDIDLVQVAAYDTEAKGKLKGTFAISAYKGGGEGETK
CCHHHHHHHHHHHHHHCCHHHHCCCCHHEEEEEECCCCCCCEEEEEEEEEECCCCCCCCE
IYSASGQTGREVLARASEKSSGPLELGQLRVIIFNEKIIDKGMQEILETLNRNPSVGNAI
EEECCCCHHHHHHHHHCCCCCCCEEECEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEE
YLAITNVKGESLLKGNYSEEKEIASYLSSLLEQNMDNGTQPKTNFFMFLNQLNDDARDSY
EEEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC
LPIISKKGNVLELDGIALFKRCKMVDKVNPKDLFVFKLLTDNFKQGTYQFKLPGSSNTYA
CCEEECCCCEEEECHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCEEEEECCCCCCCEE
TIENIKARTKYKMEGNSKHPFVNAHIQVKAEIQEFTKTKNLDNPKEIKKLEKIMEKEIEK
EHHCCHHHEEEEECCCCCCCEEEEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
KATTLIKRFIKKDTDPIGLRKLGRTHVRKWNSQEWEESYKHLRFRVTADVKVTQSGVTE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHEEEEEEECEEECCCCCCC
>Mature Secondary Structure
MKRWILFLIVSVFLIGCAKTKIVDDIDLVQVAAYDTEAKGKLKGTFAISAYKGGGEGETK
CCHHHHHHHHHHHHHHCCHHHHCCCCHHEEEEEECCCCCCCEEEEEEEEEECCCCCCCCE
IYSASGQTGREVLARASEKSSGPLELGQLRVIIFNEKIIDKGMQEILETLNRNPSVGNAI
EEECCCCHHHHHHHHHCCCCCCCEEECEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEE
YLAITNVKGESLLKGNYSEEKEIASYLSSLLEQNMDNGTQPKTNFFMFLNQLNDDARDSY
EEEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC
LPIISKKGNVLELDGIALFKRCKMVDKVNPKDLFVFKLLTDNFKQGTYQFKLPGSSNTYA
CCEEECCCCEEEECHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCEEEEECCCCCCCEE
TIENIKARTKYKMEGNSKHPFVNAHIQVKAEIQEFTKTKNLDNPKEIKKLEKIMEKEIEK
EHHCCHHHEEEEECCCCCCCEEEEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
KATTLIKRFIKKDTDPIGLRKLGRTHVRKWNSQEWEESYKHLRFRVTADVKVTQSGVTE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHEEEEEEECEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]