Click here to switch to the map view.

The map label for this gene is ysfB [H]

Identifier: 218902504

GI number: 218902504

Start: 1323313

End: 1324428

Strand: Reverse

Name: ysfB [H]

Synonym: BCAH820_1387

Alternate gene names: 218902504

Gene position: 1324428-1323313 (Counterclockwise)

Preceding gene: 218902514

Following gene: 218902503

Centisome position: 24.98

GC content: 34.59

Gene sequence:

>1116_bases
ATGCTTTTTCCTGATTTAGCGAATAAAATTGTACGAGAAGTACGCAGACTAATTAAAGAAAATATTATTATCATTAATAT
ACAAGGCGTTATTATCGCAAGTACAGATATAGAAAGAATCGGTCAATTTCATGAAGGCGCACTCCGCTGTGCGAAACAAA
AGAAAACTGTCATTATTACAAAAGAAGATGAACGACGTTTGCATGGCGTAAAGGCGGGTATGAATCTCCCTTTACTATTC
CATGACGAAGTAATTGGTGTCATTGGAATTACAGGTGAACCTGAAAACATTTCCCAATACGGAGAAATATTACGTAAAAT
GACCGAACTACTCATTCACGAAAACTACTTTTTAGAACAGCTAGAACTTGAACACCGTTCTTATGAAGCATTTGTCTTTG
ATTGGCTCCAAAATACAGACTGGTCTCCAAGCTTTCTCGATCGTGCCAAAACACTTGGTATTGATTTATATAAGAAGAAA
CAACTTATTTTGTTCTCTATCGATCAAAATGACACGATGCTTCAGCGTAAGATTTGGCAACACGTACGCAATCTATTAAC
AAAGGAGCATCTATTTGTTCGCTGGGGAAATGATCGATTCATTTTATTTACAGCGATGAGCTCTAAAGAGCAAACATATC
AATTTTTAAAACGATTAAAACAAGACTGTGAAACTTTATTTTCTATTCCTTTATATATCGGGATTGGACAATCCGTTACG
CCAAGCAATATGAATTTATCGTACGAACAAGCATTACAAGCTCTTTCCGTATCACTTGCAACGAAAAAGATTGTATTTAA
TGACGATTTACGTTTAGAAATGTGCTTACAAGATATTTCTGCGGAAACGAGAGAACAGTTTCTAAAGCGCACCATCAAAA
ACTTACTATCATCGCCTGAGCTTATGCACACTTTACGTTTATTTATCGATTATAACCAATCCTATAAACAAACAGCGGAG
CAATTACATATACACATTAACACATTGCATTACAGACTTAAAAAGATTGAGGAGTATACAGGACTTGATCCGAAACAATT
CAAAGACTTAAACATTTTATACTTCTCGCTCCTCTTATTAGATAATCACACAAAAAAGAATGATAAAATAGATTAA

Upstream 100 bases:

>100_bases
TGTAAAATAACAAATAAATGTGTGGAAAGTGTGAAATTTCCCTTTCCTACTTCATTTACATATATAATGTACAACAAATA
GAATTTGAGGTGTGCCAATT

Downstream 100 bases:

>100_bases
TCTTTAGATGATTATACATAGAAAGAATCCCCCGACTTTTTTATCATTATAATGAAAGCACTGTGACAACGTTTTTTATT
ATGACTCATTACGTTAACAG

Product: putative carbohydrate diacid regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIITKEDERRLHGVKAGMNLPLLF
HDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQLELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKK
QLILFSIDQNDTMLQRKIWQHVRNLLTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
PSNMNLSYEQALQALSVSLATKKIVFNDDLRLEMCLQDISAETREQFLKRTIKNLLSSPELMHTLRLFIDYNQSYKQTAE
QLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLLDNHTKKNDKID

Sequences:

>Translated_371_residues
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIITKEDERRLHGVKAGMNLPLLF
HDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQLELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKK
QLILFSIDQNDTMLQRKIWQHVRNLLTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
PSNMNLSYEQALQALSVSLATKKIVFNDDLRLEMCLQDISAETREQFLKRTIKNLLSSPELMHTLRLFIDYNQSYKQTAE
QLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLLDNHTKKNDKID
>Mature_371_residues
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIITKEDERRLHGVKAGMNLPLLF
HDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQLELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKK
QLILFSIDQNDTMLQRKIWQHVRNLLTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
PSNMNLSYEQALQALSVSLATKKIVFNDDLRLEMCLQDISAETREQFLKRTIKNLLSSPELMHTLRLFIDYNQSYKQTAE
QLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLLDNHTKKNDKID

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=376, Percent_Identity=30.5851063829787, Blast_Score=167, Evalue=8e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 43630; Mature: 43630

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIIT
CCCHHHHHHHHHHHHHHHHCCEEEEEECEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE
KEDERRLHGVKAGMNLPLLFHDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQ
ECHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKKQLILFSIDQNDTMLQRKIWQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCEEEEEEECCCCHHHHHHHHH
HVRNLLTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
HHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCC
PSNMNLSYEQALQALSVSLATKKIVFNDDLRLEMCLQDISAETREQFLKRTIKNLLSSPE
CCCCCCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCHH
LMHTLRLFIDYNQSYKQTAEQLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLL
HHHHHHHHHHCCHHHHHHHHHHEEHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHH
DNHTKKNDKID
CCCCCCCCCCC
>Mature Secondary Structure
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIIT
CCCHHHHHHHHHHHHHHHHCCEEEEEECEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE
KEDERRLHGVKAGMNLPLLFHDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQ
ECHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKKQLILFSIDQNDTMLQRKIWQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCEEEEEEECCCCHHHHHHHHH
HVRNLLTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
HHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCC
PSNMNLSYEQALQALSVSLATKKIVFNDDLRLEMCLQDISAETREQFLKRTIKNLLSSPE
CCCCCCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCHH
LMHTLRLFIDYNQSYKQTAEQLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLL
HHHHHHHHHHCCHHHHHHHHHHEEHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHH
DNHTKKNDKID
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]