Click here to switch to the map view.

The map label for this gene is pdaA

Identifier: 218901628

GI number: 218901628

Start: 461195

End: 461977

Strand: Direct

Name: pdaA

Synonym: BCAH820_0470

Alternate gene names: NA

Gene position: 461195-461977 (Clockwise)

Preceding gene: 218901627

Following gene: 218901629

Centisome position: 8.7

GC content: 34.61

Gene sequence:

>783_bases
ATGAAACATAAATGGTTATATATCGGTCTCATTTTTTCAATTATGATGGCACTTGTTCCAGTTTCTGCACTAGCTTATAC
AAATACTCCACATAACTGGGGAATCCCGCGCCCTAAAAATGAAACAGTACCAGATGCAGGAAAGCTATATACAGATTTAC
TACAAAAAAATGGTGGGTTTTATTTAGGAGATACGAAGAAAAAGGATATTTATTTAACATTTGATAATGGATATGAGAAT
GGATACACAGGGAAAATCTTAGACGTATTAAAAGAGAAAAAAGTGCCAGCAACTTTCTTTGTAACGGGGCATTATATTAA
AACACAAAAAGATTTATTGCTAAGAATGAAAGATGAAGGACACATTATTGGAAACCATTCGTGGAGTCACCCTGATTTCA
CAGCGGTAAATGATGAGAAACTTCGTGAAGAATTAACGAGTGTAACGGAAGAAATTAAAAAAGTAACTGGGCAAAAAGAA
GTGAAATATGTACGTCCTCCGCGCGGCGTATTTAGTGAAAGAACGTTAGCTCTTACGAAAGAAATGGGCTATTATAATGT
ATTTTGGTCACTTGCATTTTTGGATTGGAAAGTAGATCAGCAAAGAGGATGGCAATATGCGCATAATAATGTTATGACGA
TGATTCATCCAGGATCTATTTTATTACTTCATGCAATATCAAAAGATAATGCAGAAGCACTTGCAAAAATCATTGATGAT
TTGCGCGAGAAAGGGTATCATTTTAAAAGTCTAGATGACTTAGTAAAAAGCAATCAACCGTAA

Upstream 100 bases:

>100_bases
GATGCATTTTTTTGGTATATATAGAAAAACATGTTCAGCATGAAAGAATGTGCGGCAACAAAAACTACAAGTACGATTAT
ATATGGAAAGGAGACTATTT

Downstream 100 bases:

>100_bases
GCATGTATGCTTGCGGTTTTCTCATGCTATAATGATGTGTAAAAAGGATGGGGAAACGTATGTGGAGCGAACATGTTACG
TTAGAGTATCCGTATCATTT

Product: delta-lactam-biosynthetic de-N-acetylase

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKHKWLYIGLIFSIMMALVPVSALAYTNTPHNWGIPRPKNETVPDAGKLYTDLLQKNGGFYLGDTKKKDIYLTFDNGYEN
GYTGKILDVLKEKKVPATFFVTGHYIKTQKDLLLRMKDEGHIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKE
VKYVRPPRGVFSERTLALTKEMGYYNVFWSLAFLDWKVDQQRGWQYAHNNVMTMIHPGSILLLHAISKDNAEALAKIIDD
LREKGYHFKSLDDLVKSNQP

Sequences:

>Translated_260_residues
MKHKWLYIGLIFSIMMALVPVSALAYTNTPHNWGIPRPKNETVPDAGKLYTDLLQKNGGFYLGDTKKKDIYLTFDNGYEN
GYTGKILDVLKEKKVPATFFVTGHYIKTQKDLLLRMKDEGHIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKE
VKYVRPPRGVFSERTLALTKEMGYYNVFWSLAFLDWKVDQQRGWQYAHNNVMTMIHPGSILLLHAISKDNAEALAKIIDD
LREKGYHFKSLDDLVKSNQP
>Mature_260_residues
MKHKWLYIGLIFSIMMALVPVSALAYTNTPHNWGIPRPKNETVPDAGKLYTDLLQKNGGFYLGDTKKKDIYLTFDNGYEN
GYTGKILDVLKEKKVPATFFVTGHYIKTQKDLLLRMKDEGHIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKE
VKYVRPPRGVFSERTLALTKEMGYYNVFWSLAFLDWKVDQQRGWQYAHNNVMTMIHPGSILLLHAISKDNAEALAKIIDD
LREKGYHFKSLDDLVKSNQP

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=186, Percent_Identity=32.258064516129, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6323338, Length=126, Percent_Identity=31.7460317460317, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014235 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 29908; Mature: 29908

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHKWLYIGLIFSIMMALVPVSALAYTNTPHNWGIPRPKNETVPDAGKLYTDLLQKNGGF
CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
YLGDTKKKDIYLTFDNGYENGYTGKILDVLKEKKVPATFFVTGHYIKTQKDLLLRMKDEG
EECCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCEEECCHHHHEEECCCC
HIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTK
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHH
EMGYYNVFWSLAFLDWKVDQQRGWQYAHNNVMTMIHPGSILLLHAISKDNAEALAKIIDD
HCCHHHHHHHHHHHEEEECHHCCCEECCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHH
LREKGYHFKSLDDLVKSNQP
HHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKHKWLYIGLIFSIMMALVPVSALAYTNTPHNWGIPRPKNETVPDAGKLYTDLLQKNGGF
CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
YLGDTKKKDIYLTFDNGYENGYTGKILDVLKEKKVPATFFVTGHYIKTQKDLLLRMKDEG
EECCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCEEECCHHHHEEECCCC
HIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTK
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHH
EMGYYNVFWSLAFLDWKVDQQRGWQYAHNNVMTMIHPGSILLLHAISKDNAEALAKIIDD
HCCHHHHHHHHHHHEEEECHHCCCEECCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHH
LREKGYHFKSLDDLVKSNQP
HHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8473853 [H]