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The map label for this gene is rpl30e [H]

Identifier: 218884683

GI number: 218884683

Start: 1271615

End: 1271929

Strand: Reverse

Name: rpl30e [H]

Synonym: DKAM_1372

Alternate gene names: 218884683

Gene position: 1271929-1271615 (Counterclockwise)

Preceding gene: 218884684

Following gene: 218884682

Centisome position: 93.17

GC content: 46.35

Gene sequence:

>315_bases
ATGAGTAGCCAGGTTGACCTGCTTAAAGCGATAAGAACGACTGCTGATACAGGGCAAATAGTGTATGGAAGTAGGCAAGT
CAGGAGACTAGTTCTTCACGGGAAGGCTAAAGCAGTAATCATAGCATCCAACGCTTCCCCGGAGATAAAAAGGGATCTAA
TATATTATGCGAAGCTAAGCAACATCCCCGTTATAATGTTCCCTGGAACAAGCATAGAGCTAGGTACCCTTTTGGGGCGT
CCCCATAGCATTACCTCAATAGCTGTGATCGATCCGGGGCAATCAAACATACTTGACTTCGCTGGAGAGGTGTAG

Upstream 100 bases:

>100_bases
ATTATAATAGGTCAAACAATACCTGTAGGAACTGGTATGGTTCAGATTTATATGACTCCAAGCCTATTAAAGACCGAGGC
TGGCAACAAAGGTGATAGGA

Downstream 100 bases:

>100_bases
AAGTAGATGAGTGACGAGAAGCCACAGGTGAAGATAACGCCTGAGGAATTCCGCTATATGACGTTATTAAACGAGCTCAC
AGGTGCTGTGGTAAGGGATT

Product: 50S ribosomal protein L30e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MSSQVDLLKAIRTTADTGQIVYGSRQVRRLVLHGKAKAVIIASNASPEIKRDLIYYAKLSNIPVIMFPGTSIELGTLLGR
PHSITSIAVIDPGQSNILDFAGEV

Sequences:

>Translated_104_residues
MSSQVDLLKAIRTTADTGQIVYGSRQVRRLVLHGKAKAVIIASNASPEIKRDLIYYAKLSNIPVIMFPGTSIELGTLLGR
PHSITSIAVIDPGQSNILDFAGEV
>Mature_103_residues
SSQVDLLKAIRTTADTGQIVYGSRQVRRLVLHGKAKAVIIASNASPEIKRDLIYYAKLSNIPVIMFPGTSIELGTLLGRP
HSITSIAVIDPGQSNILDFAGEV

Specific function: Unknown

COG id: COG1911

COG function: function code J; Ribosomal protein L30E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30e family [H]

Homologues:

Organism=Homo sapiens, GI4506631, Length=82, Percent_Identity=39.0243902439024, Blast_Score=69, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17508679, Length=82, Percent_Identity=45.1219512195122, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17864264, Length=82, Percent_Identity=37.8048780487805, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24585096, Length=82, Percent_Identity=37.8048780487805, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000231
- InterPro:   IPR022991
- InterPro:   IPR004038 [H]

Pfam domain/function: PF01248 Ribosomal_L7Ae [H]

EC number: NA

Molecular weight: Translated: 11189; Mature: 11058

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS00993 RIBOSOMAL_L30E_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQVDLLKAIRTTADTGQIVYGSRQVRRLVLHGKAKAVIIASNASPEIKRDLIYYAKLS
CCCHHHHHHHHHCCCCCCEEEECCHHHHHEEECCCCCEEEEECCCCCCHHHHEEEEEECC
NIPVIMFPGTSIELGTLLGRPHSITSIAVIDPGQSNILDFAGEV
CCCEEEECCCCEEEHHHCCCCCCCEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SSQVDLLKAIRTTADTGQIVYGSRQVRRLVLHGKAKAVIIASNASPEIKRDLIYYAKLS
CCHHHHHHHHHCCCCCCEEEECCHHHHHEEECCCCCEEEEECCCCCCHHHHEEEEEECC
NIPVIMFPGTSIELGTLLGRPHSITSIAVIDPGQSNILDFAGEV
CCCEEEECCCCEEEHHHCCCCCCCEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA