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The map label for this gene is nusA [H]

Identifier: 218884682

GI number: 218884682

Start: 1271162

End: 1271608

Strand: Reverse

Name: nusA [H]

Synonym: DKAM_1371

Alternate gene names: 218884682

Gene position: 1271608-1271162 (Counterclockwise)

Preceding gene: 218884683

Following gene: 218884681

Centisome position: 93.14

GC content: 42.95

Gene sequence:

>447_bases
ATGAGTGACGAGAAGCCACAGGTGAAGATAACGCCTGAGGAATTCCGCTATATGACGTTATTAAACGAGCTCACAGGTGC
TGTGGTAAGGGATTGTATTATTGAGGAGGATAACAACAGAGTGATCTTCCTAGTAAACCCAGAGGATGTGGGGAAGGCGA
TAGGACCCAAAGGCTTCTTCGTCCAGAGGCTGAGGAAGATACTTAATAAAAACATAGAGATAGTTGGCTACAGTAATAAC
CTCGAGGAGCAAGTCAGATATGCGTTATCACCAGCCAGGATAAAGGAGATAAAGCTCTCAACGAGACCTGATGGTAGCAA
GATCCTCTACGTGGCAGTGGATCCATCTGATAAAGGGATAGCCATCGGTAAAAACGGTAAAAACGTTCAGAGGGCTAAAC
TTATTTTAAAAAGGCATTTTAATATAGATTCAGTGATTATCGCGTAA

Upstream 100 bases:

>100_bases
AGGTACCCTTTTGGGGCGTCCCCATAGCATTACCTCAATAGCTGTGATCGATCCGGGGCAATCAAACATACTTGACTTCG
CTGGAGAGGTGTAGAAGTAG

Downstream 100 bases:

>100_bases
CACGGTTAAGTGAGGGGAGAAGATGCCCGGTAAAAAAGGCCCAAGCGGGTTGTATGCCGCTAGGAAACTGGAAGAGAAGA
GATTGAAATTCAGGTGGAGT

Product: NusA family KH domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MSDEKPQVKITPEEFRYMTLLNELTGAVVRDCIIEEDNNRVIFLVNPEDVGKAIGPKGFFVQRLRKILNKNIEIVGYSNN
LEEQVRYALSPARIKEIKLSTRPDGSKILYVAVDPSDKGIAIGKNGKNVQRAKLILKRHFNIDSVIIA

Sequences:

>Translated_148_residues
MSDEKPQVKITPEEFRYMTLLNELTGAVVRDCIIEEDNNRVIFLVNPEDVGKAIGPKGFFVQRLRKILNKNIEIVGYSNN
LEEQVRYALSPARIKEIKLSTRPDGSKILYVAVDPSDKGIAIGKNGKNVQRAKLILKRHFNIDSVIIA
>Mature_147_residues
SDEKPQVKITPEEFRYMTLLNELTGAVVRDCIIEEDNNRVIFLVNPEDVGKAIGPKGFFVQRLRKILNKNIEIVGYSNNL
EEQVRYALSPARIKEIKLSTRPDGSKILYVAVDPSDKGIAIGKNGKNVQRAKLILKRHFNIDSVIIA

Specific function: Unknown

COG id: COG0195

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR004044
- InterPro:   IPR010212 [H]

Pfam domain/function: PF07650 KH_2 [H]

EC number: NA

Molecular weight: Translated: 16721; Mature: 16590

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDEKPQVKITPEEFRYMTLLNELTGAVVRDCIIEEDNNRVIFLVNPEDVGKAIGPKGFF
CCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCHHHHHHCCCCCHH
VQRLRKILNKNIEIVGYSNNLEEQVRYALSPARIKEIKLSTRPDGSKILYVAVDPSDKGI
HHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCCCE
AIGKNGKNVQRAKLILKRHFNIDSVIIA
EECCCCCCHHHHHHHHHHCCCCCEEEEC
>Mature Secondary Structure 
SDEKPQVKITPEEFRYMTLLNELTGAVVRDCIIEEDNNRVIFLVNPEDVGKAIGPKGFF
CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCHHHHHHCCCCCHH
VQRLRKILNKNIEIVGYSNNLEEQVRYALSPARIKEIKLSTRPDGSKILYVAVDPSDKGI
HHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCCCE
AIGKNGKNVQRAKLILKRHFNIDSVIIA
EECCCCCCHHHHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2501756 [H]