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The map label for this gene is rpoE [H]

Identifier: 218884656

GI number: 218884656

Start: 1252060

End: 1252632

Strand: Reverse

Name: rpoE [H]

Synonym: DKAM_1345

Alternate gene names: 218884656

Gene position: 1252632-1252060 (Counterclockwise)

Preceding gene: 218884657

Following gene: 218884655

Centisome position: 91.75

GC content: 42.93

Gene sequence:

>573_bases
ATGTATTCACTGATAAGAGTAAATGATGTAATCAGGATACCGCCAGCAAAATTTGGGAGACCAGTGAAAGACGTGGCGCT
TGAGGAACTACGGAGCAAGTACGAAGGAACAATAGCATCAATAGAGTCCAAGGGCGGCGAACATAAGCTAGGGATTATAG
TAACCATAATAGATGTAAAAGTCGATGAAAATGGGAGGATACTACCCGGAGACGGTGCAACATACCATGACGTGGAAATG
AGTGCCCTAGTATTCAGCCCATTCATCAAGGAAGTTGTTGAGGGCGAAGCAGTTACGGTAGCTAAGTCAGGTATATATTT
AAACCTAGGTGTTTTAGATGGATTCATCCATATAAACCAGGTATCCGAGGAAAAGGTTTCCTATGACAATACACGTTCGG
CAATAATGTTAGAGGAGTCCCATAGAACAATAGAGAAAGGAGACATTCTCAGAGCAAAGATATACACTATTGGAATATTA
CCGGGTAAGGGGTTGAGAATACATATGACGATGAAGCAACCATACCTGGGGAAGCTAGAGTGGGTAAGTAAGCAGGGTGG
TCAAGGTGAGTAG

Upstream 100 bases:

>100_bases
CTCATTCTACTGATTTAAGGGCATCATTATAATTAGTATTTAAAACCTATAATAGTTAATTAAAAATATCAACACATATT
TAAACACTGGTGATTAAACC

Downstream 100 bases:

>100_bases
TAGAGGTAAACCCTTTAAGGCATGCCGGAGATGTAGGTCCCTAGTACCTAAAAACGCTGAAACATGCCCGGTGTGTGGAT
CCCAGGACTTTACTTTTGAA

Product: DNA-directed RNA polymerase subunit E'

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MYSLIRVNDVIRIPPAKFGRPVKDVALEELRSKYEGTIASIESKGGEHKLGIIVTIIDVKVDENGRILPGDGATYHDVEM
SALVFSPFIKEVVEGEAVTVAKSGIYLNLGVLDGFIHINQVSEEKVSYDNTRSAIMLEESHRTIEKGDILRAKIYTIGIL
PGKGLRIHMTMKQPYLGKLEWVSKQGGQGE

Sequences:

>Translated_190_residues
MYSLIRVNDVIRIPPAKFGRPVKDVALEELRSKYEGTIASIESKGGEHKLGIIVTIIDVKVDENGRILPGDGATYHDVEM
SALVFSPFIKEVVEGEAVTVAKSGIYLNLGVLDGFIHINQVSEEKVSYDNTRSAIMLEESHRTIEKGDILRAKIYTIGIL
PGKGLRIHMTMKQPYLGKLEWVSKQGGQGE
>Mature_190_residues
MYSLIRVNDVIRIPPAKFGRPVKDVALEELRSKYEGTIASIESKGGEHKLGIIVTIIDVKVDENGRILPGDGATYHDVEM
SALVFSPFIKEVVEGEAVTVAKSGIYLNLGVLDGFIHINQVSEEKVSYDNTRSAIMLEESHRTIEKGDILRAKIYTIGIL
PGKGLRIHMTMKQPYLGKLEWVSKQGGQGE

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1095

COG function: function code K; DNA-directed RNA polymerase, subunit E'

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI24475814, Length=138, Percent_Identity=25.3623188405797, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI65301161, Length=138, Percent_Identity=25.3623188405797, Blast_Score=74, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6322705, Length=158, Percent_Identity=29.1139240506329, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR005576
- InterPro:   IPR004519 [H]

Pfam domain/function: PF03876 RNA_pol_Rpb7_N; PF00575 S1 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 20993; Mature: 20993

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSLIRVNDVIRIPPAKFGRPVKDVALEELRSKYEGTIASIESKGGEHKLGIIVTIIDVK
CCEEEEECCEEECCCHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEEEEEE
VDENGRILPGDGATYHDVEMSALVFSPFIKEVVEGEAVTVAKSGIYLNLGVLDGFIHINQ
ECCCCCEECCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEEEEEEEEEC
VSEEKVSYDNTRSAIMLEESHRTIEKGDILRAKIYTIGILPGKGLRIHMTMKQPYLGKLE
CCCHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCCCEE
WVSKQGGQGE
EECCCCCCCC
>Mature Secondary Structure
MYSLIRVNDVIRIPPAKFGRPVKDVALEELRSKYEGTIASIESKGGEHKLGIIVTIIDVK
CCEEEEECCEEECCCHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEEEEEE
VDENGRILPGDGATYHDVEMSALVFSPFIKEVVEGEAVTVAKSGIYLNLGVLDGFIHINQ
ECCCCCEECCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEEEEEEEEEC
VSEEKVSYDNTRSAIMLEESHRTIEKGDILRAKIYTIGILPGKGLRIHMTMKQPYLGKLE
CCCHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCCCEE
WVSKQGGQGE
EECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8127719 [H]