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The map label for this gene is rps3Ae

Identifier: 218884646

GI number: 218884646

Start: 1245293

End: 1245934

Strand: Reverse

Name: rps3Ae

Synonym: DKAM_1335

Alternate gene names: 218884646

Gene position: 1245934-1245293 (Counterclockwise)

Preceding gene: 218884647

Following gene: 218884645

Centisome position: 91.26

GC content: 41.12

Gene sequence:

>642_bases
ATGTCTTCCAAGCACAGAGCTGTTGTGAAAGATAAGTGGAAGATGAAGAAGTGGTATGAAGTAGTTGCACCAACCTCGTT
CGGAGGTATAACTCTAGGTTCAACACCAGCTGATGACCCAGAGAAGTTGATTGGCAGGGTAATTGAGACAACATTGTACG
ATATAACCGGAGATATAACGCAGGTACATGTAAAACTATACTTCCAAATAATCAGTATCGATGGAAACAAGGCTTTAACA
AGGTTCAAGGGGCATGAATTGGCCCGAGACTACATGAGGAGCCTCGTAAGGAGGAAGAGTAGTAAGATTCAAGGCATATT
CGATATCAACACGAAAGACGGATACGTACTCCGTGTAACAATAGTTGCATTAACAAGCTACAGATGTAATACTAGTCAAA
AGAAAGCAATAAGGAGAGTGATGAGGGAATATATCTTTAAGAAAGCCAGCGAGTTAACACTTGATGAACTAGTACAGGAG
ATAATGAGCTATAAGATCTCAAATGAAATAGCTGAGCTCGCTAGAAAGATATATCCAATTAGAAGGGTAGAAGTATACAA
GACAAAGCTGCTCCTGATACCATCACCCGAAGGACCTAAGCCGGCAGTAGTTATTTCACCGCTTCAAGCAAGAGAGGAGT
AA

Upstream 100 bases:

>100_bases
TCGATGAATAGTGTTAATTAGTATGTATAATGAATATATTTAAATATCCCTTTACTAATCTAGGACGCCTTAGTGAAAAC
GGTTACCAGGGTTGTTAGGA

Downstream 100 bases:

>100_bases
AACGCTTTTAACACGTTCGATCTACTTCCTTATCTACTCTTAGTTACTGAGTCTATAGGGGCAGCCATTGTTTTACTAGG
GTGAGTTTTCTACAGGTAAC

Product: 30S ribosomal protein S3Ae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MSSKHRAVVKDKWKMKKWYEVVAPTSFGGITLGSTPADDPEKLIGRVIETTLYDITGDITQVHVKLYFQIISIDGNKALT
RFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCNTSQKKAIRRVMREYIFKKASELTLDELVQE
IMSYKISNEIAELARKIYPIRRVEVYKTKLLLIPSPEGPKPAVVISPLQAREE

Sequences:

>Translated_213_residues
MSSKHRAVVKDKWKMKKWYEVVAPTSFGGITLGSTPADDPEKLIGRVIETTLYDITGDITQVHVKLYFQIISIDGNKALT
RFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCNTSQKKAIRRVMREYIFKKASELTLDELVQE
IMSYKISNEIAELARKIYPIRRVEVYKTKLLLIPSPEGPKPAVVISPLQAREE
>Mature_212_residues
SSKHRAVVKDKWKMKKWYEVVAPTSFGGITLGSTPADDPEKLIGRVIETTLYDITGDITQVHVKLYFQIISIDGNKALTR
FKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCNTSQKKAIRRVMREYIFKKASELTLDELVQEI
MSYKISNEIAELARKIYPIRRVEVYKTKLLLIPSPEGPKPAVVISPLQAREE

Specific function: Unknown

COG id: COG1890

COG function: function code J; Ribosomal protein S3AE

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S3Ae family

Homologues:

Organism=Homo sapiens, GI4506723, Length=209, Percent_Identity=33.0143540669856, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17553700, Length=203, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6323474, Length=202, Percent_Identity=29.2079207920792, Blast_Score=97, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6323577, Length=200, Percent_Identity=28.5, Blast_Score=97, Evalue=3e-21,
Organism=Drosophila melanogaster, GI17864162, Length=204, Percent_Identity=29.9019607843137, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24638499, Length=161, Percent_Identity=30.4347826086957, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS3A_DESK1 (B8D6D0)

Other databases:

- EMBL:   CP001140
- RefSeq:   YP_002429028.1
- GeneID:   7171385
- GenomeReviews:   CP001140_GR
- KEGG:   dka:DKAM_1335
- HOGENOM:   HBG402643
- OMA:   GHDTTRE
- ProtClustDB:   PRK04057
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00359
- InterPro:   IPR001593
- InterPro:   IPR018281
- PANTHER:   PTHR11830

Pfam domain/function: PF01015 Ribosomal_S3Ae

EC number: NA

Molecular weight: Translated: 24436; Mature: 24305

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS01191 RIBOSOMAL_S3AE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKHRAVVKDKWKMKKWYEVVAPTSFGGITLGSTPADDPEKLIGRVIETTLYDITGDIT
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCHH
QVHVKLYFQIISIDGNKALTRFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVT
HHEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEE
IVALTSYRCNTSQKKAIRRVMREYIFKKASELTLDELVQEIMSYKISNEIAELARKIYPI
EEEHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
RRVEVYKTKLLLIPSPEGPKPAVVISPLQAREE
HHEEEEEEEEEEEECCCCCCCEEEECCHHCCCC
>Mature Secondary Structure 
SSKHRAVVKDKWKMKKWYEVVAPTSFGGITLGSTPADDPEKLIGRVIETTLYDITGDIT
CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCHH
QVHVKLYFQIISIDGNKALTRFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVT
HHEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEE
IVALTSYRCNTSQKKAIRRVMREYIFKKASELTLDELVQEIMSYKISNEIAELARKIYPI
EEEHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
RRVEVYKTKLLLIPSPEGPKPAVVISPLQAREE
HHEEEEEEEEEEEECCCCCCCEEEECCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA