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The map label for this gene is rps17p [H]

Identifier: 218884477

GI number: 218884477

Start: 1089088

End: 1089438

Strand: Reverse

Name: rps17p [H]

Synonym: DKAM_1166

Alternate gene names: 218884477

Gene position: 1089438-1089088 (Counterclockwise)

Preceding gene: 218884478

Following gene: 218884476

Centisome position: 79.8

GC content: 44.16

Gene sequence:

>351_bases
ATGAGTCAGAGCAGGGTTAATAACATAGGTGTAACTGGTATTAATCCCCCCGAGAAAATATGTAATGACCCCAAGTGCCC
CTGGCATGGAAGACTTAAGGTTAGGGGAGTAATTTTAACAGGTGTTGTAGCCAAGAAGAAGATGCAGAGGACTGTTGTTG
TTAGACATGAGTACTTGCACTACGTGAAGAAATACATGAGATATGAGAAACGCCATAGGAACATACATGCCCACCTACCT
CCATGCATAGATGTTAAAGAAGGCGATACAGTAGTGATCGGTGAAACACGTCCCCTCGCAAAAACAGTTGCCTTTGTAGT
CCTAGGAGTGATCAAACGAGGTGGTGAGTGA

Upstream 100 bases:

>100_bases
CGAGTTCATGCTCCCTGACGGGGAAGCCGTGGTTATTAAAGGGTCTACGATTATTGGTAGACCCTGGGATAGATTGAAAA
TGGTTTCGAGGTAGGTTTCC

Downstream 100 bases:

>100_bases
TGGGTGCAAAGAGAGCTGTAGCCGGTAAACCAGCCTTCTCGAGGCGGAGGGTGAACACCGGCCTCCAAGTGATGTCTATA
GCTAAGGCAGCTGATAACAG

Product: 30S ribosomal protein S17P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSQSRVNNIGVTGINPPEKICNDPKCPWHGRLKVRGVILTGVVAKKKMQRTVVVRHEYLHYVKKYMRYEKRHRNIHAHLP
PCIDVKEGDTVVIGETRPLAKTVAFVVLGVIKRGGE

Sequences:

>Translated_116_residues
MSQSRVNNIGVTGINPPEKICNDPKCPWHGRLKVRGVILTGVVAKKKMQRTVVVRHEYLHYVKKYMRYEKRHRNIHAHLP
PCIDVKEGDTVVIGETRPLAKTVAFVVLGVIKRGGE
>Mature_115_residues
SQSRVNNIGVTGINPPEKICNDPKCPWHGRLKVRGVILTGVVAKKKMQRTVVVRHEYLHYVKKYMRYEKRHRNIHAHLPP
CIDVKEGDTVVIGETRPLAKTVAFVVLGVIKRGGE

Specific function: One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA [H]

COG id: COG0186

COG function: function code J; Ribosomal protein S17

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S17P family [H]

Homologues:

Organism=Homo sapiens, GI4506681, Length=112, Percent_Identity=54.4642857142857, Blast_Score=121, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17542016, Length=93, Percent_Identity=62.3655913978495, Blast_Score=117, Evalue=8e-28,
Organism=Saccharomyces cerevisiae, GI6320228, Length=94, Percent_Identity=50, Blast_Score=102, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6319522, Length=94, Percent_Identity=50, Blast_Score=102, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24652922, Length=115, Percent_Identity=53.9130434782609, Blast_Score=119, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24652924, Length=112, Percent_Identity=55.3571428571429, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000266
- InterPro:   IPR019978
- ProDom:   PD001295 [H]

Pfam domain/function: PF00366 Ribosomal_S17 [H]

EC number: NA

Molecular weight: Translated: 13162; Mature: 13031

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSRVNNIGVTGINPPEKICNDPKCPWHGRLKVRGVILTGVVAKKKMQRTVVVRHEYLH
CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
YVKKYMRYEKRHRNIHAHLPPCIDVKEGDTVVIGETRPLAKTVAFVVLGVIKRGGE
HHHHHHHHHHHCCCEECCCCCEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQSRVNNIGVTGINPPEKICNDPKCPWHGRLKVRGVILTGVVAKKKMQRTVVVRHEYLH
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
YVKKYMRYEKRHRNIHAHLPPCIDVKEGDTVVIGETRPLAKTVAFVVLGVIKRGGE
HHHHHHHHHHHCCCEECCCCCEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]