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The map label for this gene is rnp1

Identifier: 218884478

GI number: 218884478

Start: 1089445

End: 1089723

Strand: Reverse

Name: rnp1

Synonym: DKAM_1167

Alternate gene names: 218884478

Gene position: 1089723-1089445 (Counterclockwise)

Preceding gene: 218884479

Following gene: 218884477

Centisome position: 79.82

GC content: 46.24

Gene sequence:

>279_bases
ATGAGGGTGAATAGTAGGAACATTGCCTACCATGAGCTCATAGGACTGGAGGTCAGGATCCTACAGTATCCTGATCCATC
GCTTGTGGGGTTGAAGGGTAAGGTGGTTGATGAGACGTTGAAAACCCTTGTTATTGAGACCCCATCTGGTAGAAGGGTGA
GGATTTTTAAGTTCAACAGTATACTCGAGTTCATGCTCCCTGACGGGGAAGCCGTGGTTATTAAAGGGTCTACGATTATT
GGTAGACCCTGGGATAGATTGAAAATGGTTTCGAGGTAG

Upstream 100 bases:

>100_bases
ATATCGCGAGGATATTAACGGTGATCAATGAGGAAGGTGGTGTATCCGTGAGCGAGGCAAGCACTACTAGTGGAGAAACT
GGTTCAGAGGGTCAGGCGTG

Downstream 100 bases:

>100_bases
GTTTCCATGAGTCAGAGCAGGGTTAATAACATAGGTGTAACTGGTATTAATCCCCCCGAGAAAATATGTAATGACCCCAA
GTGCCCCTGGCATGGAAGAC

Product: Ribonuclease P protein component 1, Rpp29

Products: NA

Alternate protein names: RNase P component 1

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MRVNSRNIAYHELIGLEVRILQYPDPSLVGLKGKVVDETLKTLVIETPSGRRVRIFKFNSILEFMLPDGEAVVIKGSTII
GRPWDRLKMVSR

Sequences:

>Translated_92_residues
MRVNSRNIAYHELIGLEVRILQYPDPSLVGLKGKVVDETLKTLVIETPSGRRVRIFKFNSILEFMLPDGEAVVIKGSTII
GRPWDRLKMVSR
>Mature_92_residues
MRVNSRNIAYHELIGLEVRILQYPDPSLVGLKGKVVDETLKTLVIETPSGRRVRIFKFNSILEFMLPDGEAVVIKGSTII
GRPWDRLKMVSR

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG1588

COG function: function code J; RNase P/RNase MRP subunit p29

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 1 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP1_DESK1 (B8D5W2)

Other databases:

- EMBL:   CP001140
- RefSeq:   YP_002428860.1
- GeneID:   7171641
- GenomeReviews:   CP001140_GR
- KEGG:   dka:DKAM_1167
- HOGENOM:   HBG704950
- OMA:   GEYIRIS
- ProtClustDB:   CLSK965769
- HAMAP:   MF_00754
- InterPro:   IPR002730
- Gene3D:   G3DSA:2.30.30.210

Pfam domain/function: PF01868 UPF0086; SSF101744 RNase_P_Rpp29

EC number: =3.1.26.5

Molecular weight: Translated: 10479; Mature: 10479

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVNSRNIAYHELIGLEVRILQYPDPSLVGLKGKVVDETLKTLVIETPSGRRVRIFKFNS
CCCCCCCCEEEEEECEEEEEEECCCCCEEECCCCCHHCCCEEEEEECCCCCEEEEEEECC
ILEFMLPDGEAVVIKGSTIIGRPWDRLKMVSR
EEEEECCCCCEEEEECCEEECCCHHHEEECCC
>Mature Secondary Structure
MRVNSRNIAYHELIGLEVRILQYPDPSLVGLKGKVVDETLKTLVIETPSGRRVRIFKFNS
CCCCCCCCEEEEEECEEEEEEECCCCCEEECCCCCHHCCCEEEEEECCCCCEEEEEEECC
ILEFMLPDGEAVVIKGSTIIGRPWDRLKMVSR
EEEEECCCCCEEEEECCEEECCCHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA