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The map label for this gene is rps4e

Identifier: 218884474

GI number: 218884474

Start: 1087484

End: 1088242

Strand: Reverse

Name: rps4e

Synonym: DKAM_1163

Alternate gene names: 218884474

Gene position: 1088242-1087484 (Counterclockwise)

Preceding gene: 218884475

Following gene: 218884473

Centisome position: 79.71

GC content: 45.59

Gene sequence:

>759_bases
ATGGGTAGCATGGGTGGTAGCAGACATTTAAAAGCGATCAACGCGCCTAGGTATTGGCCTATACTTAGGAAGGAGTATAG
GTGGGTTGTTAAGTCATCGCCCGGCCCACACCCCATATCTAGGTCGCTTCCACTATTAATCCTTGTCAGAGATATGCTGG
GTTATGCTAAAACAGGTAAGGAGGCTAGGAGGCTCATAGCCGAGGGATACTTCAAGATCGATGGGAGAGTGAGGAGAGAT
TACAAGTTCCCTGTCGGCGTAATGGATGTAATCGAGATCGTGGGGGTCAATAAATACTACAGGGTCATCCCAGTACCAAC
CAAGGTACTGGGGTTGATTGAGATATCGAGGGAGGAGGCATCCTTCAAGCTGTGCAGGATAGAGAATAAGACCACGGTGA
AGAACGGTCATATACAGTTAAACCTGCATGATGGACGAAACGTGTTAATTAGGGTCAATGATCCAAGAAATCCTGTTGAA
GACACGTATGATACACTAGGCGTGTTAAAGCTATCCATACCTGTTCAACAAATCCTCGACTATGTCCCCTTGAAAGAGGG
TGTTATAGCGATAGTGTCCGGTGGTAGAAACGTTGGGAGAGTGGGTAAGATTGTATCGATACACAAGGGCATGAGGAGAT
ATAGGAGTATAGTCACGCTTGAAGATAAGCAAGGCAATAAGTTCCAGACTAGCTTGGACTACATATTCCCAATAGGTGTT
GAAAAACCATTAATAAAACTGCCTGAGGGTGCATGGTAA

Upstream 100 bases:

>100_bases
TGATTATAAAGGCTGATCTAAGTGATAAAAGAAGGCTTGAGATAATTGAGCGGAGGAAGGCTGGTACTAGTAGTGAGCAC
AGTCAAGAGGTGGCTTAGAA

Downstream 100 bases:

>100_bases
TGAGTATCCTCACACAGGATGTTGAAAGCAGGATTCTTGAGAAATGGAATAGCAATCCAATGCTTAAGCCTTTCATAGCT
AAGGTAACAGTTAACATAGG

Product: 30S ribosomal protein S4e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MGSMGGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRD
YKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVE
DTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGV
EKPLIKLPEGAW

Sequences:

>Translated_252_residues
MGSMGGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRD
YKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVE
DTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGV
EKPLIKLPEGAW
>Mature_251_residues
GSMGGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDY
KFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVED
TYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGVE
KPLIKLPEGAW

Specific function: Unknown

COG id: COG1471

COG function: function code J; Ribosomal protein S4E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI4506725, Length=249, Percent_Identity=34.136546184739, Blast_Score=142, Evalue=2e-34,
Organism=Homo sapiens, GI4506727, Length=249, Percent_Identity=33.7349397590361, Blast_Score=140, Evalue=8e-34,
Organism=Homo sapiens, GI88703062, Length=251, Percent_Identity=33.0677290836653, Blast_Score=137, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17543386, Length=248, Percent_Identity=36.2903225806452, Blast_Score=148, Evalue=2e-36,
Organism=Saccharomyces cerevisiae, GI6322605, Length=249, Percent_Identity=33.7349397590361, Blast_Score=141, Evalue=8e-35,
Organism=Saccharomyces cerevisiae, GI6321997, Length=249, Percent_Identity=33.7349397590361, Blast_Score=141, Evalue=8e-35,
Organism=Drosophila melanogaster, GI24663672, Length=249, Percent_Identity=34.5381526104418, Blast_Score=141, Evalue=4e-34,
Organism=Drosophila melanogaster, GI24663668, Length=249, Percent_Identity=34.5381526104418, Blast_Score=141, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4E_DESK1 (B8D5V8)

Other databases:

- EMBL:   CP001140
- RefSeq:   YP_002428856.1
- ProteinModelPortal:   B8D5V8
- GeneID:   7171249
- GenomeReviews:   CP001140_GR
- KEGG:   dka:DKAM_1163
- HOGENOM:   HBG392118
- OMA:   QLNLHDG
- ProtClustDB:   PRK04313
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00485
- InterPro:   IPR000876
- InterPro:   IPR022994
- InterPro:   IPR013845
- InterPro:   IPR013843
- InterPro:   IPR002942
- PANTHER:   PTHR11581
- PIRSF:   PIRSF002116
- ProDom:   PD002667
- SMART:   SM00363

Pfam domain/function: PF00900 Ribosomal_S4e; PF08071 RS4NT; PF01479 S4

EC number: NA

Molecular weight: Translated: 28550; Mature: 28419

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: PS00528 RIBOSOMAL_S4E; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSMGGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGK
CCCCCCCCCEEECCCCCCCHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCH
EARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEA
HHHHHHHCCEEEECCEEEECCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHEEECCCCC
SFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILD
CEEEEEECCCCEEECCEEEEEEECCCEEEEEECCCCCCHHHHHHHHEEEEEECCHHHHHH
YVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGV
HCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCEEEECCCEEEECCC
EKPLIKLPEGAW
CCCEEECCCCCC
>Mature Secondary Structure 
GSMGGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGK
CCCCCCCCEEECCCCCCCHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCH
EARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEA
HHHHHHHCCEEEECCEEEECCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHEEECCCCC
SFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILD
CEEEEEECCCCEEECCEEEEEEECCCEEEEEECCCCCCHHHHHHHHEEEEEECCHHHHHH
YVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGV
HCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCEEEECCCEEEECCC
EKPLIKLPEGAW
CCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA