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The map label for this gene is rnp4 [H]

Identifier: 218884427

GI number: 218884427

Start: 1050619

End: 1050996

Strand: Reverse

Name: rnp4 [H]

Synonym: DKAM_1116

Alternate gene names: 218884427

Gene position: 1050996-1050619 (Counterclockwise)

Preceding gene: 218884432

Following gene: 218884426

Centisome position: 76.98

GC content: 44.71

Gene sequence:

>378_bases
GTGGTGGAATATAATTATATAACTCCACCACGCGGGGTCTGGTTCTTGAATAGGGAAAAATATATAAGGGAGATTGCTAG
GGAACGGGTGATACTGCTCTACAAGTACTCAGTAGAAAGGGCTAGAGAAGGAGATTTCGAGTTAGCGAGGAGATACATCG
AGATAATGCTTAAGATAGCTGGGAAAGCCAGGATTAAGCCTCCCAGGTACATTAGGAGGGGTTATTGCAGGAGGTGTCAT
ATACCATTAATACCTGGTTTAACACTTAGTGTAAGAGTGAGGGGTAGTGGCAAGTCGTCCAGGTTGGTCTATAGGTGTCT
GCAATGTGGATGGGTGAGGAGATATATGATAAAGGCCTCAGGGAGAAGATCAAGCTGA

Upstream 100 bases:

>100_bases
GGTGTGATGCAATGCTTGGGGGTATAGTCTCTAATGCTGCTTCCACGAGTATTATCTTAAGCCTCCCCAGCTCAATCACC
TTTCTCTCCAATTTAATACC

Downstream 100 bases:

>100_bases
GGATAGCCGGTAAAGTCGATGTACAGCTAGGTAAGAATGGGGTAACCCAGGGATTCATTGAGGAGGTCAGGCTAAGGCTC
CGGAAACACGGCGTGGTGAA

Product: RNAse P, Rpr2/Rpp21 subunit

Products: NA

Alternate protein names: RNase P component 4 [H]

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MVEYNYITPPRGVWFLNREKYIREIARERVILLYKYSVERAREGDFELARRYIEIMLKIAGKARIKPPRYIRRGYCRRCH
IPLIPGLTLSVRVRGSGKSSRLVYRCLQCGWVRRYMIKASGRRSS

Sequences:

>Translated_125_residues
MVEYNYITPPRGVWFLNREKYIREIARERVILLYKYSVERAREGDFELARRYIEIMLKIAGKARIKPPRYIRRGYCRRCH
IPLIPGLTLSVRVRGSGKSSRLVYRCLQCGWVRRYMIKASGRRSS
>Mature_125_residues
MVEYNYITPPRGVWFLNREKYIREIARERVILLYKYSVERAREGDFELARRYIEIMLKIAGKARIKPPRYIRRGYCRRCH
IPLIPGLTLSVRVRGSGKSSRLVYRCLQCGWVRRYMIKASGRRSS

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends [H]

COG id: COG2023

COG function: function code J; RNase P subunit RPR2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016432
- InterPro:   IPR007175 [H]

Pfam domain/function: PF04032 Rpr2 [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 14958; Mature: 14958

Theoretical pI: Translated: 11.29; Mature: 11.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEYNYITPPRGVWFLNREKYIREIARERVILLYKYSVERAREGDFELARRYIEIMLKIA
CCCCCCCCCCCCEEEECHHHHHHHHHHHHEEEEEECCHHHCCCCCHHHHHHHHHHHHHHH
GKARIKPPRYIRRGYCRRCHIPLIPGLTLSVRVRGSGKSSRLVYRCLQCGWVRRYMIKAS
CCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
GRRSS
CCCCC
>Mature Secondary Structure
MVEYNYITPPRGVWFLNREKYIREIARERVILLYKYSVERAREGDFELARRYIEIMLKIA
CCCCCCCCCCCCEEEECHHHHHHHHHHHHEEEEEECCHHHCCCCCHHHHHHHHHHHHHHH
GKARIKPPRYIRRGYCRRCHIPLIPGLTLSVRVRGSGKSSRLVYRCLQCGWVRRYMIKAS
CCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
GRRSS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA