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The map label for this gene is dapA [H]

Identifier: 218884409

GI number: 218884409

Start: 1037556

End: 1038455

Strand: Reverse

Name: dapA [H]

Synonym: DKAM_1098

Alternate gene names: 218884409

Gene position: 1038455-1037556 (Counterclockwise)

Preceding gene: 218884410

Following gene: 218884408

Centisome position: 76.06

GC content: 39.89

Gene sequence:

>900_bases
ATGCGGGTACATGGAATCATCACAGCATTACTAACACCATTAAACAAAGATCTAACCCTTTGCGATGAATGCTTAAAGGA
TCTCATAGAATTCCAGGCAAGCAAAGGTGTTGCAGGGATATATTTAACTGGTACTGCCGGTGAGGGGATAATACTACCTG
TTGAAACAAGAATTGAGCTGTTTAAGAAGGCACTTGAGTATGCCCCCTCAAACATATACCTACTACCACATATAGGCGCT
GCATCTATTGATGTGGTGCTTAAATTAGCTAAGGAAGTAAAGGATCTCGGATACAAGGATGTAAGCTTGATAGCGCCAAT
ATTTCACAAGCCAACAAGAAAAGGGATGATCAGATTCTTCGAAGAGATCTCCTCGAGAACCGAGCTTAATATAGTAATAT
ATAATAATAAGAGTAGACAGGGATATAATATTTCCCCAGATGATTTCCAAGCCATAGTGGATGCCGCCAGATCGGTTATA
GGGATCAAGGATACGAGTAAAGACGTGGATCAACTACTAGAATATGTTAAGAGATTCAGCCCTAAGTACTTTATTGCTGG
AGCCGGCGATGAGTTAATCTTATACACGTTCCTTATAGGTGCTCATGCACATGTATGTGCTGTTTCAAATGTTATACCTG
AAATCGTCGTAGAGCTCTATAAGACTGTGTTAGGTGGAGATATCAAGAAGGCTATTGAGCTACAGTACAAGATAAATGGT
TTAAGGAAGCAAATAAGTAAAATATCGGTCGAGTCACAGGAAGTTCTAAGACATCTGGCTTCATTAAGAGGGCTGAAGCC
TGGTTATCCACCGTTACAACTGGATTTCGACTACGATGAGAAAACAACAGAGGAATTAAAAGCAGCATTAAGCAAAGTAT
TGGGTGTTATAAATGTCTAG

Upstream 100 bases:

>100_bases
AATTTTTCAGGTAATCTCTAATCTAATAAATACTATAAAACAGATTTTATTATACACTAAAAACCTTCTGTTAAAAATAT
TTCATAACGGTGGTATATTA

Downstream 100 bases:

>100_bases
GGTTAAAATAGCGATAGTAAACTCTAAATCGTTTGGTGTATATACGAATGCTGTTGAGCGATTAAAGGAGGTAGGTGTCG
TCGATAAAATAGAAGTTGAA

Product: Putative dihidrodipicolinate synthase

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MRVHGIITALLTPLNKDLTLCDECLKDLIEFQASKGVAGIYLTGTAGEGIILPVETRIELFKKALEYAPSNIYLLPHIGA
ASIDVVLKLAKEVKDLGYKDVSLIAPIFHKPTRKGMIRFFEEISSRTELNIVIYNNKSRQGYNISPDDFQAIVDAARSVI
GIKDTSKDVDQLLEYVKRFSPKYFIAGAGDELILYTFLIGAHAHVCAVSNVIPEIVVELYKTVLGGDIKKAIELQYKING
LRKQISKISVESQEVLRHLASLRGLKPGYPPLQLDFDYDEKTTEELKAALSKVLGVINV

Sequences:

>Translated_299_residues
MRVHGIITALLTPLNKDLTLCDECLKDLIEFQASKGVAGIYLTGTAGEGIILPVETRIELFKKALEYAPSNIYLLPHIGA
ASIDVVLKLAKEVKDLGYKDVSLIAPIFHKPTRKGMIRFFEEISSRTELNIVIYNNKSRQGYNISPDDFQAIVDAARSVI
GIKDTSKDVDQLLEYVKRFSPKYFIAGAGDELILYTFLIGAHAHVCAVSNVIPEIVVELYKTVLGGDIKKAIELQYKING
LRKQISKISVESQEVLRHLASLRGLKPGYPPLQLDFDYDEKTTEELKAALSKVLGVINV
>Mature_299_residues
MRVHGIITALLTPLNKDLTLCDECLKDLIEFQASKGVAGIYLTGTAGEGIILPVETRIELFKKALEYAPSNIYLLPHIGA
ASIDVVLKLAKEVKDLGYKDVSLIAPIFHKPTRKGMIRFFEEISSRTELNIVIYNNKSRQGYNISPDDFQAIVDAARSVI
GIKDTSKDVDQLLEYVKRFSPKYFIAGAGDELILYTFLIGAHAHVCAVSNVIPEIVVELYKTVLGGDIKKAIELQYKING
LRKQISKISVESQEVLRHLASLRGLKPGYPPLQLDFDYDEKTTEELKAALSKVLGVINV

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Homo sapiens, GI13540533, Length=280, Percent_Identity=22.1428571428571, Blast_Score=69, Evalue=7e-12,
Organism=Escherichia coli, GI87082415, Length=240, Percent_Identity=25.4166666666667, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786463, Length=230, Percent_Identity=26.0869565217391, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1789620, Length=238, Percent_Identity=26.4705882352941, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788823, Length=242, Percent_Identity=22.7272727272727, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 33174; Mature: 33174

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVHGIITALLTPLNKDLTLCDECLKDLIEFQASKGVAGIYLTGTAGEGIILPVETRIEL
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEHHHHHHH
FKKALEYAPSNIYLLPHIGAASIDVVLKLAKEVKDLGYKDVSLIAPIFHKPTRKGMIRFF
HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH
EEISSRTELNIVIYNNKSRQGYNISPDDFQAIVDAARSVIGIKDTSKDVDQLLEYVKRFS
HHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
PKYFIAGAGDELILYTFLIGAHAHVCAVSNVIPEIVVELYKTVLGGDIKKAIELQYKING
CCEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LRKQISKISVESQEVLRHLASLRGLKPGYPPLQLDFDYDEKTTEELKAALSKVLGVINV
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRVHGIITALLTPLNKDLTLCDECLKDLIEFQASKGVAGIYLTGTAGEGIILPVETRIEL
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEHHHHHHH
FKKALEYAPSNIYLLPHIGAASIDVVLKLAKEVKDLGYKDVSLIAPIFHKPTRKGMIRFF
HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH
EEISSRTELNIVIYNNKSRQGYNISPDDFQAIVDAARSVIGIKDTSKDVDQLLEYVKRFS
HHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
PKYFIAGAGDELILYTFLIGAHAHVCAVSNVIPEIVVELYKTVLGGDIKKAIELQYKING
CCEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LRKQISKISVESQEVLRHLASLRGLKPGYPPLQLDFDYDEKTTEELKAALSKVLGVINV
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]