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The map label for this gene is xerC [H]

Identifier: 218884315

GI number: 218884315

Start: 950434

End: 951399

Strand: Reverse

Name: xerC [H]

Synonym: DKAM_1004

Alternate gene names: 218884315

Gene position: 951399-950434 (Counterclockwise)

Preceding gene: 218884317

Following gene: 218884313

Centisome position: 69.69

GC content: 44.0

Gene sequence:

>966_bases
ATGCTGGATTTAAGCAATAAAGAGATAGTGGAGGAGTTTAAGGCATCTCTTGAGGCATCAGGAGCATCAGAAGAGACGGT
AAAGGCGTATCTATCTGCTATCAAAGACTTCCTTGGTTTCATCGGGGATAAACCGTTAAGGGATGTAACTTTAAGGGATA
TATTGGCATGGCGTAATGATCGATTGAGAAACGGGTTTCCAAACAGGAAAATAAGTGATAAGGAGAAATGGCTGGTTACA
CTCCATTACTATACCTTGTTCCTTAAGAGGTTTTTTGAATGGCTTGGAGTAAATATAGTTGTGACACCGGTAAGGAAGCC
CCACGCCAGCATTAATGTGTTGAGCGATGAAGAGGTTGAGAAACTCTATAATGTTGCTAGGACCCCACTGGATAAACTAG
TATTGAGATTACTTGTTGACACTGGCCTCCGTAGCCGTGAGTTATTGGGCCTCCGTGTTGAAGACGTTAATTTCCATAGT
AGAGTGATAAAGGTTACTTCGGCCAAATACGGTAAGGAGAGGTACGTCGTAGCTACAGAGGAAACCTTCAAGATGCTTGA
TGCCTGGATAAGGCTCAATGGGTTGATGCCTGGAGACAGGCTCTTTAATTTAACATATAGTGGATTATATAAGAAGTTAA
AGAGATTGGCTACACGGGCTGGAATAGCCCCTGAGAGGGTTAGACCACATGTATTAAGACATACATTTGCTACGCGCGCC
CTGAGAAGAGGCCTCAGCCTTCCAGCACTCCAGAGGTTACTGGGTCACTCGGACATTAAGACTACGCAGATATACCTTCA
TCTCTCAGTAGAGGACTTGAAGAAAGAGTATTATGAGAAAATGGATAAGCACCCCGAAACTAGGGTAAGACGATGCATTA
GATGTGGTAGGGAGCTCCCCTTTGATGCGTTATATTGTCCATACTGTGGTAGTATGCAACGAGAGGCGGCCTCTATTGAG
TCTTAG

Upstream 100 bases:

>100_bases
ATTAGTAGTAGCCCTTTATCTTAAAACATGATAATAGTGGATCCATTGGCAGGGATTTGTTTTGCCGGGCAGAATAGAAC
TTGGTAAAGCGCCTCAAGGT

Downstream 100 bases:

>100_bases
GCCTCGTCGATCAACCTGGCTATAATAACCCTTGGGATATCTTTGTAACCAGGGTTTTTCTCACGGTATCTGGTAACCAG
TGCTTCTCCATCACTAACTG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MLDLSNKEIVEEFKASLEASGASEETVKAYLSAIKDFLGFIGDKPLRDVTLRDILAWRNDRLRNGFPNRKISDKEKWLVT
LHYYTLFLKRFFEWLGVNIVVTPVRKPHASINVLSDEEVEKLYNVARTPLDKLVLRLLVDTGLRSRELLGLRVEDVNFHS
RVIKVTSAKYGKERYVVATEETFKMLDAWIRLNGLMPGDRLFNLTYSGLYKKLKRLATRAGIAPERVRPHVLRHTFATRA
LRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEYYEKMDKHPETRVRRCIRCGRELPFDALYCPYCGSMQREAASIE
S

Sequences:

>Translated_321_residues
MLDLSNKEIVEEFKASLEASGASEETVKAYLSAIKDFLGFIGDKPLRDVTLRDILAWRNDRLRNGFPNRKISDKEKWLVT
LHYYTLFLKRFFEWLGVNIVVTPVRKPHASINVLSDEEVEKLYNVARTPLDKLVLRLLVDTGLRSRELLGLRVEDVNFHS
RVIKVTSAKYGKERYVVATEETFKMLDAWIRLNGLMPGDRLFNLTYSGLYKKLKRLATRAGIAPERVRPHVLRHTFATRA
LRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEYYEKMDKHPETRVRRCIRCGRELPFDALYCPYCGSMQREAASIE
S
>Mature_321_residues
MLDLSNKEIVEEFKASLEASGASEETVKAYLSAIKDFLGFIGDKPLRDVTLRDILAWRNDRLRNGFPNRKISDKEKWLVT
LHYYTLFLKRFFEWLGVNIVVTPVRKPHASINVLSDEEVEKLYNVARTPLDKLVLRLLVDTGLRSRELLGLRVEDVNFHS
RVIKVTSAKYGKERYVVATEETFKMLDAWIRLNGLMPGDRLFNLTYSGLYKKLKRLATRAGIAPERVRPHVLRHTFATRA
LRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEYYEKMDKHPETRVRRCIRCGRELPFDALYCPYCGSMQREAASIE
S

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=283, Percent_Identity=31.8021201413428, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790244, Length=214, Percent_Identity=28.9719626168224, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37214; Mature: 37214

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLSNKEIVEEFKASLEASGASEETVKAYLSAIKDFLGFIGDKPLRDVTLRDILAWRND
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
RLRNGFPNRKISDKEKWLVTLHYYTLFLKRFFEWLGVNIVVTPVRKPHASINVLSDEEVE
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCHHHHH
KLYNVARTPLDKLVLRLLVDTGLRSRELLGLRVEDVNFHSRVIKVTSAKYGKERYVVATE
HHHHHHHCCHHHHHHHHHHHCCCCCCHHHCEEEECCCHHHHHEEHHCCCCCCCEEEEECH
ETFKMLDAWIRLNGLMPGDRLFNLTYSGLYKKLKRLATRAGIAPERVRPHVLRHTFATRA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEYYEKMDKHPETRVRRCIRCGRELP
HHCCCCCHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
FDALYCPYCGSMQREAASIES
CCCEECCCCCCHHHHHHCCCC
>Mature Secondary Structure
MLDLSNKEIVEEFKASLEASGASEETVKAYLSAIKDFLGFIGDKPLRDVTLRDILAWRND
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
RLRNGFPNRKISDKEKWLVTLHYYTLFLKRFFEWLGVNIVVTPVRKPHASINVLSDEEVE
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCHHHHH
KLYNVARTPLDKLVLRLLVDTGLRSRELLGLRVEDVNFHSRVIKVTSAKYGKERYVVATE
HHHHHHHCCHHHHHHHHHHHCCCCCCHHHCEEEECCCHHHHHEEHHCCCCCCCEEEEECH
ETFKMLDAWIRLNGLMPGDRLFNLTYSGLYKKLKRLATRAGIAPERVRPHVLRHTFATRA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEYYEKMDKHPETRVRRCIRCGRELP
HHCCCCCHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
FDALYCPYCGSMQREAASIES
CCCEECCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA