| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218884295
Identifier: 218884295
GI number: 218884295
Start: 933350
End: 934369
Strand: Reverse
Name: 218884295
Synonym: DKAM_0984
Alternate gene names: NA
Gene position: 934369-933350 (Counterclockwise)
Preceding gene: 218884296
Following gene: 218884294
Centisome position: 68.44
GC content: 47.16
Gene sequence:
>1020_bases ATGTCTGAGAATATTAAGAGAGTATTTGTGGCGGGTGACTGGGACGCCGATGGTGTGGTTGCAGCCGCGCTCATCGTATA TAGTCAAGAGAAGATCGGCAAATACCCCCTTGAATCCAAGGCTGTGGTCGACAAGGTACCTTTAGACCCGGATAAAGCCA AGTATTTCCTGGCTAGTTTTAAAGGGGGATATGATTTAGCGGTCTTCCTGGACATACCATACAGCGAGTATCTTGGTAAC GCTATGAAGATGATGAAGAATCACTTCGGAGTCTCTCAGATAGTATTCATAGATCACCATATAACAAGCCTGCAGAAGGC CAGGGAACTCCAGGCGTTAGCCGATATCGTGGTGATCGATCATAAGATGCCCACGGCTGGGCTGGTCCTCTGGGAACTCG AGAAGAAAGGCATCAGTGTCCACCAGAGATTAAGGAGTTTTGTCGAGGTAGTTAAATACATGGATATGGGGAAGAGGGTG CCGGAGCAATACATGAAGTTATTCGAGTTAACCAAGATGTTCTCGAAGGCTTTAACCGTTATAAGAGATGAAACCCTATG GGCTAAGATAGTCGAATGGCTTGCCACACCAGCTCCCCTACCAATGCCTCTTGATGAGGCGTTGTGGGGTAAGGTCAAGG CAATTATAGAGGAGAGGGATAAGGAGGTGGCTGATAAGGCGATGGAACTAGCCGTTGGCGCTATTAAAGTAGGTGATTTC CGCTTCATTGACGCGAGGAATGAGTGGAAGAAGAGAGGGGTTACCGCGCTTGCTTCAAAGCTTTCGACAATACTTAAGGC ACCAGTACTACTACTAGCTGGGACCAATAGAGAGTACACCCTCCTAGTTATAAAGGCGTCTCATGGTAGGGCCTACAGGA TAGCTAAGTATCTTGTTGGGGAGGGTGTAGCATTAGATATAGCCGGGCATCCCAACCTAGCTATAGTGAGATTACCGAAA GACCTGGAGAAGCAAGAGCTGATTAAAATACTGTATCAAGCCGTATACTACTCCACATAA
Upstream 100 bases:
>100_bases GAATTATGCAGGTATATAGGCGTATTAATGCCGGTAATTAAAGTTTTAATTATCATTAAATACTATCTAAGGCAATGACA ACAGATTCGAGGTGCTTACC
Downstream 100 bases:
>100_bases CCTGCAGGAACATGCCATGATCAAAATACTCGTCTCGAAAAACTCTATGCATATGCATGTATCGAGGGAGCATCACCCTG AAAATCCTGAGAGAATAGTG
Product: phosphoesterase, RecJ domain-containing protein
Products: NA
Alternate protein names: Phosphoesterase RecJ Domain Protein; Phosphoesterase DHH Family
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MSENIKRVFVAGDWDADGVVAAALIVYSQEKIGKYPLESKAVVDKVPLDPDKAKYFLASFKGGYDLAVFLDIPYSEYLGN AMKMMKNHFGVSQIVFIDHHITSLQKARELQALADIVVIDHKMPTAGLVLWELEKKGISVHQRLRSFVEVVKYMDMGKRV PEQYMKLFELTKMFSKALTVIRDETLWAKIVEWLATPAPLPMPLDEALWGKVKAIIEERDKEVADKAMELAVGAIKVGDF RFIDARNEWKKRGVTALASKLSTILKAPVLLLAGTNREYTLLVIKASHGRAYRIAKYLVGEGVALDIAGHPNLAIVRLPK DLEKQELIKILYQAVYYST
Sequences:
>Translated_339_residues MSENIKRVFVAGDWDADGVVAAALIVYSQEKIGKYPLESKAVVDKVPLDPDKAKYFLASFKGGYDLAVFLDIPYSEYLGN AMKMMKNHFGVSQIVFIDHHITSLQKARELQALADIVVIDHKMPTAGLVLWELEKKGISVHQRLRSFVEVVKYMDMGKRV PEQYMKLFELTKMFSKALTVIRDETLWAKIVEWLATPAPLPMPLDEALWGKVKAIIEERDKEVADKAMELAVGAIKVGDF RFIDARNEWKKRGVTALASKLSTILKAPVLLLAGTNREYTLLVIKASHGRAYRIAKYLVGEGVALDIAGHPNLAIVRLPK DLEKQELIKILYQAVYYST >Mature_338_residues SENIKRVFVAGDWDADGVVAAALIVYSQEKIGKYPLESKAVVDKVPLDPDKAKYFLASFKGGYDLAVFLDIPYSEYLGNA MKMMKNHFGVSQIVFIDHHITSLQKARELQALADIVVIDHKMPTAGLVLWELEKKGISVHQRLRSFVEVVKYMDMGKRVP EQYMKLFELTKMFSKALTVIRDETLWAKIVEWLATPAPLPMPLDEALWGKVKAIIEERDKEVADKAMELAVGAIKVGDFR FIDARNEWKKRGVTALASKLSTILKAPVLLLAGTNREYTLLVIKASHGRAYRIAKYLVGEGVALDIAGHPNLAIVRLPKD LEKQELIKILYQAVYYST
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38150; Mature: 38019
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSENIKRVFVAGDWDADGVVAAALIVYSQEKIGKYPLESKAVVDKVPLDPDKAKYFLASF CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHC KGGYDLAVFLDIPYSEYLGNAMKMMKNHFGVSQIVFIDHHITSLQKARELQALADIVVID CCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHEEE HKMPTAGLVLWELEKKGISVHQRLRSFVEVVKYMDMGKRVPEQYMKLFELTKMFSKALTV CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH IRDETLWAKIVEWLATPAPLPMPLDEALWGKVKAIIEERDKEVADKAMELAVGAIKVGDF HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCE RFIDARNEWKKRGVTALASKLSTILKAPVLLLAGTNREYTLLVIKASHGRAYRIAKYLVG EEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHC EGVALDIAGHPNLAIVRLPKDLEKQELIKILYQAVYYST CCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SENIKRVFVAGDWDADGVVAAALIVYSQEKIGKYPLESKAVVDKVPLDPDKAKYFLASF CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHC KGGYDLAVFLDIPYSEYLGNAMKMMKNHFGVSQIVFIDHHITSLQKARELQALADIVVID CCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHEEE HKMPTAGLVLWELEKKGISVHQRLRSFVEVVKYMDMGKRVPEQYMKLFELTKMFSKALTV CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH IRDETLWAKIVEWLATPAPLPMPLDEALWGKVKAIIEERDKEVADKAMELAVGAIKVGDF HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCE RFIDARNEWKKRGVTALASKLSTILKAPVLLLAGTNREYTLLVIKASHGRAYRIAKYLVG EEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHC EGVALDIAGHPNLAIVRLPKDLEKQELIKILYQAVYYST CCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA