| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218883450
Identifier: 218883450
GI number: 218883450
Start: 123019
End: 125475
Strand: Reverse
Name: 218883450
Synonym: DKAM_0136
Alternate gene names: NA
Gene position: 125475-123019 (Counterclockwise)
Preceding gene: 218883451
Following gene: 218883449
Centisome position: 9.19
GC content: 43.02
Gene sequence:
>2457_bases ATGAGTGTTAATGAAGCCGTGTCTAATACTATTTACAAGGTATACGAGTACTTTATACAACATCCAAGGGCAGCAAAAAC CATTATGTATATTCTTCTAGCACTTATATTGGTGTACGGTGTATACGTGAGGTTTTCACCGTATTGGTTGAACGGCTTCG AATTCTTCGAATTTGATAGCTACATAGAGTATTGGCAAGCCAAGTACGTGTATGAGAATGGCTTACTCTCATGGTACACG CTTACCAGGGATAACCCTGCAACGCATATATTCTGGTATCCATGGGGTAGGGATATAATCTACACTAGCTACCCGTTTCT ACCAATATGGACTGGTACAACGTATCATTTAGTGGAAGGCCTAGGGTTAACGCTGAAAGAGTGGGGAATACTGCAACCAC TTATATTCGCCGCTATAGGTATAATCCTTGCATACATAACTGGTAGAGAGCTCTCAAATGGTAATAGAATAGCTGGTTTA ATAGCAGCACTGCTTATAGCTATACTACCCGCTGCAACTGAGAGAACAGTTATAGGGTACATCGAGAAAGAAGGTGTTGC AATTGTCCCCTTACTACTCTACATCTATTTCTATAGTAAGTTGGCGAAGTCCATTAATAGGGATGAGTCGAGCCTGAGGA AGGCGTTATACACAGTCCTATCAGGGTTCTTCCTTGCAGTAGTAGGGTGGCTATGGGGTGGCTACGTCTTTATACTTGGT ACAATGGTTGCATTCACCATACTATATCCGCTTCTAACTAGAAGCGGTGTCACAAGGGAATTTCTCATATATCAGGTGGG ATTAATAGTGTTATCTATGGTCTTCGTGATGCCCTCGCCAGCTAACGCGTCAAACCTGGGGGTGTACCCGTTTAACCCAC GGGAGCTTGGTACGGCATTATTATCCACCCTGATACTCCCTGTTATATACTATCTATTCAACACCGAGTACAAGAAGCTA GGGTTCAAAAAACCTCTTTTAACAAAGGGAAGATACTTTATTCTACTAGTATTGCTAGTTATTGGAGGAGCTGTGCTAAT TACGCGTGGCTACATACCTATTGGCGGTAGGCTTGCATGGGCTCTTGGACTGAGATTTATACCGGCAACACCCCTTGTAG AAAGCATCGCTGAGCACCAGTCGCCGCTTTCAAGCTATAGTACCCTGGTAGGTATGCTGCATTCATGGGGGGTTTACCCC TGGCTATTCTACGCATCCCCATTGATCCTAAGCATAATAGGAGCTCTTTACTTCATCTACCGTGGGGAACCTGATAAATT ATATGTATCCATAGCATTCTTGCTAGCATTCTACTCGTATCTTAATGCAGCCTACATGATAGCTATAGCCGCTTATTTCG GTACATTGGTTATGGGAGTCTTCATCGGGAGGTTATTCGAATACATAATGCCAACATCCCAGGAGTTAATAGATAGAAGA AAAGGGCGTGTCAGATATAGGCAGACCCGGGGGTACCGGGTGATCGTGCTAGCTATACTAGTACTAGCCCTGATCAATAT AGGGTACGCCGGTTACACGGACTACGCATCGAATACAAGCATGATCTACACGTTAAAGGCTGGTGTCTCAGGGCTCCCCT TCTACACTGATTCCTGGTATAAGGCTGTTGAATTAATGAGAAGCCTGCCCAATGATTCCCTTGTAATAGCATGGTGGGAT TACGGATATGGTATATCCGTGGATGGTGGTAAAGCCAGTGTAGCAGATGGTTCAACACTCAATGAAACGCAAATAGGTAT TATTGGCTTAATAATGTCATCCATTAATACCAGTACTTCCTTCGAGCTCGCTGGGCTCTTTAACCCTCCATTAAACAACA CGTATTTAATGGCTATAGATTCATTCATTGTATCAAGCGATAACACCAGTGTAACCATATGGCCGATAATGACTGGAGGC ATGCCCGGCACCGTTGATATACCAAAGAGTATCTGGATGATAAGAATAGGGAACTCGACTGTTGATAGGCTAAGGGCGCT GGGGATAAATATATCATATGTGGATACCACGCGGTTCATCTACGTATATAACTTCCAGGATACCTCGATAATTTCACCGG TATTTGACTCGCCTAACACACTTCCATTACTCTACAAGATGCTGATGGATGGAGTAATGTACTGGGCTGAGTTAAACAAT AAGTCCTATACATTTAAATGGTTCACGGGGTCCCAGGGACTCCTTGATTCGTCAACAGCATCAAGGATCAAGGAGGTCAC CGGTTTAGATGTCAAATACTATATTCAGGCACGATCTATTTCATCAATAAACACCAGACCCCTAGCTAATGATACATATA TTAAACCATTTAGGATAATAATGGAGCCATTCATTAATCCATGGACTGGTCAACCCGTAAGGATTTCAACACCTGATGGT GGCAATGGTATACTATATAGTATCATAGTGTTCTATCAATTAAACCCCGTATCCTGA
Upstream 100 bases:
>100_bases TACTAGCCCTCCTAACTCCATAGAGATTATCCCACTAAGGTTTTTTACTACATTCTATCATACCGTTACTAGTCAGGACC ATGATAGATGGGTGCTGTGA
Downstream 100 bases:
>100_bases AACCCTTTTTCTTTTAAAGCATTTACAAACCCATAATATGGTTAGGTAGCAAGGTGCTGACGAATGTTTAGGAGAAGCAG GGATCCTTTGAGAAAGGCCT
Product: Oligosaccharyl transferase subunit
Products: NA
Alternate protein names: Oligosaccharyl Transferase STT3 Like-Protein; Oligosaccharyl Transferase STT3-Like Protein; Oligosaccharyl Transferase Subunit
Number of amino acids: Translated: 818; Mature: 817
Protein sequence:
>818_residues MSVNEAVSNTIYKVYEYFIQHPRAAKTIMYILLALILVYGVYVRFSPYWLNGFEFFEFDSYIEYWQAKYVYENGLLSWYT LTRDNPATHIFWYPWGRDIIYTSYPFLPIWTGTTYHLVEGLGLTLKEWGILQPLIFAAIGIILAYITGRELSNGNRIAGL IAALLIAILPAATERTVIGYIEKEGVAIVPLLLYIYFYSKLAKSINRDESSLRKALYTVLSGFFLAVVGWLWGGYVFILG TMVAFTILYPLLTRSGVTREFLIYQVGLIVLSMVFVMPSPANASNLGVYPFNPRELGTALLSTLILPVIYYLFNTEYKKL GFKKPLLTKGRYFILLVLLVIGGAVLITRGYIPIGGRLAWALGLRFIPATPLVESIAEHQSPLSSYSTLVGMLHSWGVYP WLFYASPLILSIIGALYFIYRGEPDKLYVSIAFLLAFYSYLNAAYMIAIAAYFGTLVMGVFIGRLFEYIMPTSQELIDRR KGRVRYRQTRGYRVIVLAILVLALINIGYAGYTDYASNTSMIYTLKAGVSGLPFYTDSWYKAVELMRSLPNDSLVIAWWD YGYGISVDGGKASVADGSTLNETQIGIIGLIMSSINTSTSFELAGLFNPPLNNTYLMAIDSFIVSSDNTSVTIWPIMTGG MPGTVDIPKSIWMIRIGNSTVDRLRALGINISYVDTTRFIYVYNFQDTSIISPVFDSPNTLPLLYKMLMDGVMYWAELNN KSYTFKWFTGSQGLLDSSTASRIKEVTGLDVKYYIQARSISSINTRPLANDTYIKPFRIIMEPFINPWTGQPVRISTPDG GNGILYSIIVFYQLNPVS
Sequences:
>Translated_818_residues MSVNEAVSNTIYKVYEYFIQHPRAAKTIMYILLALILVYGVYVRFSPYWLNGFEFFEFDSYIEYWQAKYVYENGLLSWYT LTRDNPATHIFWYPWGRDIIYTSYPFLPIWTGTTYHLVEGLGLTLKEWGILQPLIFAAIGIILAYITGRELSNGNRIAGL IAALLIAILPAATERTVIGYIEKEGVAIVPLLLYIYFYSKLAKSINRDESSLRKALYTVLSGFFLAVVGWLWGGYVFILG TMVAFTILYPLLTRSGVTREFLIYQVGLIVLSMVFVMPSPANASNLGVYPFNPRELGTALLSTLILPVIYYLFNTEYKKL GFKKPLLTKGRYFILLVLLVIGGAVLITRGYIPIGGRLAWALGLRFIPATPLVESIAEHQSPLSSYSTLVGMLHSWGVYP WLFYASPLILSIIGALYFIYRGEPDKLYVSIAFLLAFYSYLNAAYMIAIAAYFGTLVMGVFIGRLFEYIMPTSQELIDRR KGRVRYRQTRGYRVIVLAILVLALINIGYAGYTDYASNTSMIYTLKAGVSGLPFYTDSWYKAVELMRSLPNDSLVIAWWD YGYGISVDGGKASVADGSTLNETQIGIIGLIMSSINTSTSFELAGLFNPPLNNTYLMAIDSFIVSSDNTSVTIWPIMTGG MPGTVDIPKSIWMIRIGNSTVDRLRALGINISYVDTTRFIYVYNFQDTSIISPVFDSPNTLPLLYKMLMDGVMYWAELNN KSYTFKWFTGSQGLLDSSTASRIKEVTGLDVKYYIQARSISSINTRPLANDTYIKPFRIIMEPFINPWTGQPVRISTPDG GNGILYSIIVFYQLNPVS >Mature_817_residues SVNEAVSNTIYKVYEYFIQHPRAAKTIMYILLALILVYGVYVRFSPYWLNGFEFFEFDSYIEYWQAKYVYENGLLSWYTL TRDNPATHIFWYPWGRDIIYTSYPFLPIWTGTTYHLVEGLGLTLKEWGILQPLIFAAIGIILAYITGRELSNGNRIAGLI AALLIAILPAATERTVIGYIEKEGVAIVPLLLYIYFYSKLAKSINRDESSLRKALYTVLSGFFLAVVGWLWGGYVFILGT MVAFTILYPLLTRSGVTREFLIYQVGLIVLSMVFVMPSPANASNLGVYPFNPRELGTALLSTLILPVIYYLFNTEYKKLG FKKPLLTKGRYFILLVLLVIGGAVLITRGYIPIGGRLAWALGLRFIPATPLVESIAEHQSPLSSYSTLVGMLHSWGVYPW LFYASPLILSIIGALYFIYRGEPDKLYVSIAFLLAFYSYLNAAYMIAIAAYFGTLVMGVFIGRLFEYIMPTSQELIDRRK GRVRYRQTRGYRVIVLAILVLALINIGYAGYTDYASNTSMIYTLKAGVSGLPFYTDSWYKAVELMRSLPNDSLVIAWWDY GYGISVDGGKASVADGSTLNETQIGIIGLIMSSINTSTSFELAGLFNPPLNNTYLMAIDSFIVSSDNTSVTIWPIMTGGM PGTVDIPKSIWMIRIGNSTVDRLRALGINISYVDTTRFIYVYNFQDTSIISPVFDSPNTLPLLYKMLMDGVMYWAELNNK SYTFKWFTGSQGLLDSSTASRIKEVTGLDVKYYIQARSISSINTRPLANDTYIKPFRIIMEPFINPWTGQPVRISTPDGG NGILYSIIVFYQLNPVS
Specific function: Unknown
COG id: COG1287
COG function: function code R; Uncharacterized membrane protein, required for N-linked glycosylation
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22749415, Length=652, Percent_Identity=25.3067484662577, Blast_Score=119, Evalue=1e-26, Organism=Homo sapiens, GI30578410, Length=661, Percent_Identity=23.4493192133132, Blast_Score=99, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17555006, Length=639, Percent_Identity=24.4131455399061, Blast_Score=107, Evalue=4e-23, Organism=Saccharomyces cerevisiae, GI6321416, Length=588, Percent_Identity=23.2993197278912, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI20129103, Length=635, Percent_Identity=24.5669291338583, Blast_Score=115, Evalue=2e-25, Organism=Drosophila melanogaster, GI17738187, Length=661, Percent_Identity=23.6006051437216, Blast_Score=101, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92111; Mature: 91980
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVNEAVSNTIYKVYEYFIQHPRAAKTIMYILLALILVYGVYVRFSPYWLNGFEFFEFDS CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEHHHHH YIEYWQAKYVYENGLLSWYTLTRDNPATHIFWYPWGRDIIYTSYPFLPIWTGTTYHLVEG HHHHHHHHHHEECCCEEEEEEECCCCCCEEEEECCCCCEEEECCCCEEEECCCHHHHHHC LGLTLKEWGILQPLIFAAIGIILAYITGRELSNGNRIAGLIAALLIAILPAATERTVIGY CCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE IEKEGVAIVPLLLYIYFYSKLAKSINRDESSLRKALYTVLSGFFLAVVGWLWGGYVFILG EECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMVAFTILYPLLTRSGVTREFLIYQVGLIVLSMVFVMPSPANASNLGVYPFNPRELGTAL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH LSTLILPVIYYLFNTEYKKLGFKKPLLTKGRYFILLVLLVIGGAVLITRGYIPIGGRLAW HHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHH ALGLRFIPATPLVESIAEHQSPLSSYSTLVGMLHSWGVYPWLFYASPLILSIIGALYFIY HHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC RGEPDKLYVSIAFLLAFYSYLNAAYMIAIAAYFGTLVMGVFIGRLFEYIMPTSQELIDRR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH KGRVRYRQTRGYRVIVLAILVLALINIGYAGYTDYASNTSMIYTLKAGVSGLPFYTDSWY HCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHH KAVELMRSLPNDSLVIAWWDYGYGISVDGGKASVADGSTLNETQIGIIGLIMSSINTSTS HHHHHHHHCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC FELAGLFNPPLNNTYLMAIDSFIVSSDNTSVTIWPIMTGGMPGTVDIPKSIWMIRIGNST EEEEEECCCCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCEECCCCEEEEEECCHH VDRLRALGINISYVDTTRFIYVYNFQDTSIISPVFDSPNTLPLLYKMLMDGVMYWAELNN HHHHHHHCCEEEEEECEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECC KSYTFKWFTGSQGLLDSSTASRIKEVTGLDVKYYIQARSISSINTRPLANDTYIKPFRII CEEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHH MEPFINPWTGQPVRISTPDGGNGILYSIIVFYQLNPVS HHHCCCCCCCCCEEEECCCCCCCHHEEEEEEEECCCCC >Mature Secondary Structure SVNEAVSNTIYKVYEYFIQHPRAAKTIMYILLALILVYGVYVRFSPYWLNGFEFFEFDS CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEHHHHH YIEYWQAKYVYENGLLSWYTLTRDNPATHIFWYPWGRDIIYTSYPFLPIWTGTTYHLVEG HHHHHHHHHHEECCCEEEEEEECCCCCCEEEEECCCCCEEEECCCCEEEECCCHHHHHHC LGLTLKEWGILQPLIFAAIGIILAYITGRELSNGNRIAGLIAALLIAILPAATERTVIGY CCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE IEKEGVAIVPLLLYIYFYSKLAKSINRDESSLRKALYTVLSGFFLAVVGWLWGGYVFILG EECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMVAFTILYPLLTRSGVTREFLIYQVGLIVLSMVFVMPSPANASNLGVYPFNPRELGTAL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH LSTLILPVIYYLFNTEYKKLGFKKPLLTKGRYFILLVLLVIGGAVLITRGYIPIGGRLAW HHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHH ALGLRFIPATPLVESIAEHQSPLSSYSTLVGMLHSWGVYPWLFYASPLILSIIGALYFIY HHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC RGEPDKLYVSIAFLLAFYSYLNAAYMIAIAAYFGTLVMGVFIGRLFEYIMPTSQELIDRR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH KGRVRYRQTRGYRVIVLAILVLALINIGYAGYTDYASNTSMIYTLKAGVSGLPFYTDSWY HCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHH KAVELMRSLPNDSLVIAWWDYGYGISVDGGKASVADGSTLNETQIGIIGLIMSSINTSTS HHHHHHHHCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC FELAGLFNPPLNNTYLMAIDSFIVSSDNTSVTIWPIMTGGMPGTVDIPKSIWMIRIGNST EEEEEECCCCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCEECCCCEEEEEECCHH VDRLRALGINISYVDTTRFIYVYNFQDTSIISPVFDSPNTLPLLYKMLMDGVMYWAELNN HHHHHHHCCEEEEEECEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECC KSYTFKWFTGSQGLLDSSTASRIKEVTGLDVKYYIQARSISSINTRPLANDTYIKPFRII CEEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHH MEPFINPWTGQPVRISTPDGGNGILYSIIVFYQLNPVS HHHCCCCCCCCCEEEECCCCCCCHHEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA