| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218883404
Identifier: 218883404
GI number: 218883404
Start: 80358
End: 81677
Strand: Reverse
Name: 218883404
Synonym: DKAM_0090
Alternate gene names: NA
Gene position: 81677-80358 (Counterclockwise)
Preceding gene: 218883406
Following gene: 218883403
Centisome position: 5.98
GC content: 51.21
Gene sequence:
>1320_bases TTGTCGGGGATAAACAGCCTAGTTAAGTTCTACGTTGTTGGAAGCATCCCGAGTAGTGTACAGCAACTCTTCAAGTCATT GGGCATACAGCTCACCTACATACCGCTAGAAGGAGGCTTAGCAAGAGCGACTAAGCTTGAGGACAACTCAGTCGTAGTAA TCAATACGCGGGATGCGGGACTCAAGCCCCTAAACTACTACTACGTGCTTACAAGGCTACTCGACAAAGCCTCCAACTAC ATAATCGTGCTCGTCAACAAGGATCCAAAGGCGCGGGACCATTCAGTGCTAGACGCTCACGCCTCAGTCTTCAAAGTACT CTCACAGGTCTACGGCAAGACCTACGAACCGGTAATGGTGTGCGACCCAAGCGACGAGACTCTATGGCAACCTAGAGAAG GCGAGAAGCCCAGTGGTTGCAGACTACACCCAGCAGTAGTTAGCGCGGATGCCGTGGCCTACTACACGAGACCCCCGGGC ACTGTAGTAGTTGAAAACCTGGACGAAAACAACGCAGCCAGCGTGGTGGTCTTCATATTGAAGGCCTACTTACCCAACAG CGTGTTCACCAAGCTCGCGACTCTCTTGCCTAGAGACCTTGTTCCATCAACGTCGATTAAGGAGGGGCCTAGCAACATGG TTCCGCTGGGCACCGTTGGCTGGATCACAAACTACACGAGGGGGAGAACGTGTGGAGAAATCACAGGCTACCAGTCATTT TACATCCGATATTTCTACGGGAACATTACGTTGGCCACCGGCACTCTCTACCACGTGTTTTACGCATATGCTGTTCACTC GGGTAAGGGTTACCAGACCACTTGTTGGTGGTCTACAATTAACCACTACCCAAGAGTATTTGAAACCGTAATATACTGGA AGACTGACACCTATCCTGGTCAAGTACTGGACGACTGGGGTCCCAAGAACGCCGGCTCGCAGAGGGTAATAACCTACACC GTGTCAGCGGGCATGGCTATTGGCAAGGACTTTTCTGCTACTATTGAATACTCGACAGGTTTTACGGAGCCAAACGCGCC ATACTATACGTGGATGGACTTAACAGACCCGCCTTTAGGTAAGGTCAAAGTGAGACACATAGTTGAAAGAGGGGGGTGGC CTGAGGACCGGCTGAACGATGTGTTATTTACGGTCGAGCCGAGTAGCTATGGATACTTAGACCCCAACAAGCCTGGTGGA TACCTGCCAATGGTGGTATATCACTCGATGTACATGGAGCTGAACACCGGTGACAGCACGAACGTCACGATAGCCGCCCT TTTGCGGACCAATAGCTATGACTGGTGGTTCACGTCTTAG
Upstream 100 bases:
>100_bases AGCGTTGCTGATCTCCGTTCTCGTAATCACCTCAGTACTTTACGGGTACCACGTTCAAACATTTAGTAGCGCGGTTGCTG GAGGGTCGCGGTCTTACGAC
Downstream 100 bases:
>100_bases CTTTATCTGATTCACTTTTTTTCCCGCTACGTCTCCTCTACGAACCCGCAGTAACTGGGGCGAGTTTATGGTCGAGAACC CTTTGCTTGCATTGAGTACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 439; Mature: 438
Protein sequence:
>439_residues MSGINSLVKFYVVGSIPSSVQQLFKSLGIQLTYIPLEGGLARATKLEDNSVVVINTRDAGLKPLNYYYVLTRLLDKASNY IIVLVNKDPKARDHSVLDAHASVFKVLSQVYGKTYEPVMVCDPSDETLWQPREGEKPSGCRLHPAVVSADAVAYYTRPPG TVVVENLDENNAASVVVFILKAYLPNSVFTKLATLLPRDLVPSTSIKEGPSNMVPLGTVGWITNYTRGRTCGEITGYQSF YIRYFYGNITLATGTLYHVFYAYAVHSGKGYQTTCWWSTINHYPRVFETVIYWKTDTYPGQVLDDWGPKNAGSQRVITYT VSAGMAIGKDFSATIEYSTGFTEPNAPYYTWMDLTDPPLGKVKVRHIVERGGWPEDRLNDVLFTVEPSSYGYLDPNKPGG YLPMVVYHSMYMELNTGDSTNVTIAALLRTNSYDWWFTS
Sequences:
>Translated_439_residues MSGINSLVKFYVVGSIPSSVQQLFKSLGIQLTYIPLEGGLARATKLEDNSVVVINTRDAGLKPLNYYYVLTRLLDKASNY IIVLVNKDPKARDHSVLDAHASVFKVLSQVYGKTYEPVMVCDPSDETLWQPREGEKPSGCRLHPAVVSADAVAYYTRPPG TVVVENLDENNAASVVVFILKAYLPNSVFTKLATLLPRDLVPSTSIKEGPSNMVPLGTVGWITNYTRGRTCGEITGYQSF YIRYFYGNITLATGTLYHVFYAYAVHSGKGYQTTCWWSTINHYPRVFETVIYWKTDTYPGQVLDDWGPKNAGSQRVITYT VSAGMAIGKDFSATIEYSTGFTEPNAPYYTWMDLTDPPLGKVKVRHIVERGGWPEDRLNDVLFTVEPSSYGYLDPNKPGG YLPMVVYHSMYMELNTGDSTNVTIAALLRTNSYDWWFTS >Mature_438_residues SGINSLVKFYVVGSIPSSVQQLFKSLGIQLTYIPLEGGLARATKLEDNSVVVINTRDAGLKPLNYYYVLTRLLDKASNYI IVLVNKDPKARDHSVLDAHASVFKVLSQVYGKTYEPVMVCDPSDETLWQPREGEKPSGCRLHPAVVSADAVAYYTRPPGT VVVENLDENNAASVVVFILKAYLPNSVFTKLATLLPRDLVPSTSIKEGPSNMVPLGTVGWITNYTRGRTCGEITGYQSFY IRYFYGNITLATGTLYHVFYAYAVHSGKGYQTTCWWSTINHYPRVFETVIYWKTDTYPGQVLDDWGPKNAGSQRVITYTV SAGMAIGKDFSATIEYSTGFTEPNAPYYTWMDLTDPPLGKVKVRHIVERGGWPEDRLNDVLFTVEPSSYGYLDPNKPGGY LPMVVYHSMYMELNTGDSTNVTIAALLRTNSYDWWFTS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49052; Mature: 48921
Theoretical pI: Translated: 6.95; Mature: 6.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGINSLVKFYVVGSIPSSVQQLFKSLGIQLTYIPLEGGLARATKLEDNSVVVINTRDAG CCCHHHHEEEEEECCCCHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC LKPLNYYYVLTRLLDKASNYIIVLVNKDPKARDHSVLDAHASVFKVLSQVYGKTYEPVMV CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE CDPSDETLWQPREGEKPSGCRLHPAVVSADAVAYYTRPPGTVVVENLDENNAASVVVFIL ECCCCCCCCCCCCCCCCCCCEECHHEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHH KAYLPNSVFTKLATLLPRDLVPSTSIKEGPSNMVPLGTVGWITNYTRGRTCGEITGYQSF HHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEE YIRYFYGNITLATGTLYHVFYAYAVHSGKGYQTTCWWSTINHYPRVFETVIYWKTDTYPG EEEEEECCEEEEHHHHHHHHHHHEEECCCCCEEEEEHHHHHCCHHHEEEEEEEECCCCCC QVLDDWGPKNAGSQRVITYTVSAGMAIGKDFSATIEYSTGFTEPNAPYYTWMDLTDPPLG CCCCCCCCCCCCCCEEEEEEEECCEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCCC KVKVRHIVERGGWPEDRLNDVLFTVEPSSYGYLDPNKPGGYLPMVVYHSMYMELNTGDST HHHHHHHHHCCCCCHHHHCCEEEEECCCCCCCCCCCCCCCEEHHHEEEEEEEEEECCCCC NVTIAALLRTNSYDWWFTS CEEEEEEEECCCCCEEEEC >Mature Secondary Structure SGINSLVKFYVVGSIPSSVQQLFKSLGIQLTYIPLEGGLARATKLEDNSVVVINTRDAG CCHHHHEEEEEECCCCHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC LKPLNYYYVLTRLLDKASNYIIVLVNKDPKARDHSVLDAHASVFKVLSQVYGKTYEPVMV CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE CDPSDETLWQPREGEKPSGCRLHPAVVSADAVAYYTRPPGTVVVENLDENNAASVVVFIL ECCCCCCCCCCCCCCCCCCCEECHHEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHH KAYLPNSVFTKLATLLPRDLVPSTSIKEGPSNMVPLGTVGWITNYTRGRTCGEITGYQSF HHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEE YIRYFYGNITLATGTLYHVFYAYAVHSGKGYQTTCWWSTINHYPRVFETVIYWKTDTYPG EEEEEECCEEEEHHHHHHHHHHHEEECCCCCEEEEEHHHHHCCHHHEEEEEEEECCCCCC QVLDDWGPKNAGSQRVITYTVSAGMAIGKDFSATIEYSTGFTEPNAPYYTWMDLTDPPLG CCCCCCCCCCCCCCEEEEEEEECCEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCCC KVKVRHIVERGGWPEDRLNDVLFTVEPSSYGYLDPNKPGGYLPMVVYHSMYMELNTGDST HHHHHHHHHCCCCCHHHHCCEEEEECCCCCCCCCCCCCCCEEHHHEEEEEEEEEECCCCC NVTIAALLRTNSYDWWFTS CEEEEEEEECCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA