| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is pstS [H]
Identifier: 218883382
GI number: 218883382
Start: 60569
End: 61693
Strand: Reverse
Name: pstS [H]
Synonym: DKAM_0068
Alternate gene names: 218883382
Gene position: 61693-60569 (Counterclockwise)
Preceding gene: 218883384
Following gene: 218883380
Centisome position: 4.52
GC content: 44.71
Gene sequence:
>1125_bases ATGAAGGAGCCATTACTGCAGTCAATGGCGATTATTATGACTGTTCTCGCGCTCACAATAGCATTATACTTTATAGTTCT AGCACCCGATACACAGTTAGAGGGATATCATGGAACCCTTGTTATAAATGGAGCCGGCTCAACGCTTATAGCCCCACAGA TACTTGAATGGAGTAAAGAATTCACCGAGAAAACCGGCATAGTTATCGAGTACTCTCCCACTGGTAGTGGAGCCGGTAGA GCAATGTTCTTCAATAAGACAGTGGTATTCGCGGTTAGCGACCCCCCATTGGATAGGGAGACATATCTTGAATACCGGGG CAGGGTACTCCAGTTGCCCATAGTGTTAAGCGCTATAGTTATCACCTACAATATACCTGGAATACCACGCGATATACAAT TAAACCTGACTGGTAGAATTCTCGCGTTGATATACAAGGGTGAGATCACTAGATGGAACGATGAGAGAATTAAGGAGGTC AATCCAGCGATCGCCGATCTACTACCCAATAAAGAAATAGTGGTTGTGCACAGGTCGGATTCTAGTGGGACAACACGTGT CTTCGCCGCTTACCTCAACAAGGCTGCACCTGATATATGGGGGAACGAGCTTGTTGGTTTTTCAATCGAGTGGCCAGTAG ATAGAACCGGCAGAGGCCTCGGTGGGAAAGGTAATGAGGGGGTTGCAAACCTTGTAACATCAACTCCCTACTCTATAGGC TATATTGAGGCCAGCTACGCGTTATATGTTGGAATGCCAGTAGCTAGACTAGAGAATAAAGAAGGATATTTTGTTACAGC ATCCAGGGAGAATGTTCTCTCAGCTGTAAAACATGTTCTGAATCAATTACCGGGTAGTCCACTGGAAGATTTTAGCATGG TACTTGACGCGTTACTAAACACGCCCGGCCCAGACTCATACCCTATTGTATCATTCTCATACATGTTTATTTACAGTGAC TATAAAGATGTATATGTTACTGAGGCATTAAGCAGGCTCATAGAATATATTCTAATAGAGGGGCAGGATAGACTACTCCC CGGCTACTATCAGCTCCCCGATGAAGTCATCGAGATAGGCCTCAAAGCACTTGAAATTATCTCGAGGGGAAGCTATAATG GGTAA
Upstream 100 bases:
>100_bases AATACCGTAAATATAGTTTGTACACGCTTCTTACAGTAAGAACTGTAATAATATCCATGCTTTAACCTGGATACACAGTA ATCATTATCAGGGGAATATT
Downstream 100 bases:
>100_bases GAGCGAGTACACCTTCTACTTACTCCTCATCCCATCCCTACTCTCATTCTCTATTCTCACACTTATCCTCATACACGTTG TCACCCTATCCCTGCCAGCA
Product: phosphate ABC transporter, phosphate binding protein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: PBP [H]
Number of amino acids: Translated: 374; Mature: 374
Protein sequence:
>374_residues MKEPLLQSMAIIMTVLALTIALYFIVLAPDTQLEGYHGTLVINGAGSTLIAPQILEWSKEFTEKTGIVIEYSPTGSGAGR AMFFNKTVVFAVSDPPLDRETYLEYRGRVLQLPIVLSAIVITYNIPGIPRDIQLNLTGRILALIYKGEITRWNDERIKEV NPAIADLLPNKEIVVVHRSDSSGTTRVFAAYLNKAAPDIWGNELVGFSIEWPVDRTGRGLGGKGNEGVANLVTSTPYSIG YIEASYALYVGMPVARLENKEGYFVTASRENVLSAVKHVLNQLPGSPLEDFSMVLDALLNTPGPDSYPIVSFSYMFIYSD YKDVYVTEALSRLIEYILIEGQDRLLPGYYQLPDEVIEIGLKALEIISRGSYNG
Sequences:
>Translated_374_residues MKEPLLQSMAIIMTVLALTIALYFIVLAPDTQLEGYHGTLVINGAGSTLIAPQILEWSKEFTEKTGIVIEYSPTGSGAGR AMFFNKTVVFAVSDPPLDRETYLEYRGRVLQLPIVLSAIVITYNIPGIPRDIQLNLTGRILALIYKGEITRWNDERIKEV NPAIADLLPNKEIVVVHRSDSSGTTRVFAAYLNKAAPDIWGNELVGFSIEWPVDRTGRGLGGKGNEGVANLVTSTPYSIG YIEASYALYVGMPVARLENKEGYFVTASRENVLSAVKHVLNQLPGSPLEDFSMVLDALLNTPGPDSYPIVSFSYMFIYSD YKDVYVTEALSRLIEYILIEGQDRLLPGYYQLPDEVIEIGLKALEIISRGSYNG >Mature_374_residues MKEPLLQSMAIIMTVLALTIALYFIVLAPDTQLEGYHGTLVINGAGSTLIAPQILEWSKEFTEKTGIVIEYSPTGSGAGR AMFFNKTVVFAVSDPPLDRETYLEYRGRVLQLPIVLSAIVITYNIPGIPRDIQLNLTGRILALIYKGEITRWNDERIKEV NPAIADLLPNKEIVVVHRSDSSGTTRVFAAYLNKAAPDIWGNELVGFSIEWPVDRTGRGLGGKGNEGVANLVTSTPYSIG YIEASYALYVGMPVARLENKEGYFVTASRENVLSAVKHVLNQLPGSPLEDFSMVLDALLNTPGPDSYPIVSFSYMFIYSD YKDVYVTEALSRLIEYILIEGQDRLLPGYYQLPDEVIEIGLKALEIISRGSYNG
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
Organism=Escherichia coli, GI2367271, Length=319, Percent_Identity=33.5423197492163, Blast_Score=170, Evalue=1e-43,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005673 - InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 41300; Mature: 41300
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEPLLQSMAIIMTVLALTIALYFIVLAPDTQLEGYHGTLVINGAGSTLIAPQILEWSKE CCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH FTEKTGIVIEYSPTGSGAGRAMFFNKTVVFAVSDPPLDRETYLEYRGRVLQLPIVLSAIV HHHHCCEEEEECCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHCCCEEEHHHHHEEHH ITYNIPGIPRDIQLNLTGRILALIYKGEITRWNDERIKEVNPAIADLLPNKEIVVVHRSD HEECCCCCCCEEEEEECCEEEEEEEECCCCCCCHHHHHHCCHHHHHHCCCCCEEEEECCC SSGTTRVFAAYLNKAAPDIWGNELVGFSIEWPVDRTGRGLGGKGNEGVANLVTSTPYSIG CCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCEEE YIEASYALYVGMPVARLENKEGYFVTASRENVLSAVKHVLNQLPGSPLEDFSMVLDALLN EEEECEEEEECCCHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC TPGPDSYPIVSFSYMFIYSDYKDVYVTEALSRLIEYILIEGQDRLLPGYYQLPDEVIEIG CCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHEECCCCCCCCCHHHCCHHHHHHH LKALEIISRGSYNG HHHHHHHHCCCCCC >Mature Secondary Structure MKEPLLQSMAIIMTVLALTIALYFIVLAPDTQLEGYHGTLVINGAGSTLIAPQILEWSKE CCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH FTEKTGIVIEYSPTGSGAGRAMFFNKTVVFAVSDPPLDRETYLEYRGRVLQLPIVLSAIV HHHHCCEEEEECCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHCCCEEEHHHHHEEHH ITYNIPGIPRDIQLNLTGRILALIYKGEITRWNDERIKEVNPAIADLLPNKEIVVVHRSD HEECCCCCCCEEEEEECCEEEEEEEECCCCCCCHHHHHHCCHHHHHHCCCCCEEEEECCC SSGTTRVFAAYLNKAAPDIWGNELVGFSIEWPVDRTGRGLGGKGNEGVANLVTSTPYSIG CCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCEEE YIEASYALYVGMPVARLENKEGYFVTASRENVLSAVKHVLNQLPGSPLEDFSMVLDALLN EEEECEEEEECCCHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC TPGPDSYPIVSFSYMFIYSDYKDVYVTEALSRLIEYILIEGQDRLLPGYYQLPDEVIEIG CCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHEECCCCCCCCCHHHCCHHHHHHH LKALEIISRGSYNG HHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]