| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218883319
Identifier: 218883319
GI number: 218883319
Start: 2457
End: 3470
Strand: Reverse
Name: 218883319
Synonym: DKAM_0005
Alternate gene names: NA
Gene position: 3470-2457 (Counterclockwise)
Preceding gene: 218883320
Following gene: 218883317
Centisome position: 0.25
GC content: 43.59
Gene sequence:
>1014_bases ATGGCTAAGACGGTTGTAAGAGGGGCGGGGGACTCACCAACCATTAAAAAATATATTGATAAATCCCCGCTTGAAGAACT TGTTCGGAGAGCATTAAACAGAGAAGCCCCCGTTGCTAACATATTAATTAAAGCCTTGAGCCCCAATGCATTTATTGATT CGCTTTCACCAAGTGGTAGCATAGGGTTTAAATCAATCCCGGTAATCACAGTGTCCCAGGGCTTCTACAGGGTTCGAAGC ACTGGTGGAGTATTTGATGTAGGTGTAGAGGATTCTGGGGATGGCGTTATAGTTGTAGGGTATATAGAGCTGATCTTAGA GGGTTCAGGTCTCACGATTCTAAGAATACCGGAGAATCCCGTACATAGAATCATGGGTATAAAGGTAACTGTGGTTAAAG GAGTTGATCACGAGGTACTCTTGATTCATAAATCAGGTAAGAGGGCAGTGGATCTCAGCGAAATCATAGTTGAGCAAGGG GATGCAAGTAGGCTAGCCCTCGTAGCATTATTCAACACTGGCTCTATACTACAAGCCAGGGTGGAATCCATTCAGGGTGC TGGCTCATCAATAGAGAAGACTATACTGGTTAACTCTACACAGGGATCACGTGTAGAGGTAGAGGATTACTCATATATAG ATAATCCTAGTGTAAGCGTGGAGTCATATATAAGGTCTAGGCTGGAAGGGGGCTCTATAGCTGTTCTACGTGGCAGAGGC ATGGCCTCCAGAAGGGCATCTGGCTCTAGAATAGTGTATGGCATTGAGTCATTGATTAATGATGCTGAGAGTACAGCGTT CATGCATCCATTTCTAGATATACATTCCAATAATATAGTGGAAGCCAGACATTACGCTAGAAACTATTTGTTAACCATGG ATAAATTATTCTATATCGAGACAAGAGGACTGAAACCAGATGAGGCGGCCATGTTACTGGTACACGGCTTCCTAACAAGA GGACTGAGTAGAGCTGCGAGAGAAATTATTCTAAGCAATATCAGCTCTTCTTGA
Upstream 100 bases:
>100_bases GATTTGTTAAGGATATTTTTCCAAAGCTACCATTCGAGTATGCATCGATGTTGACGAAGGTTATACAGTTAGAATTCAAG GAGATCGGGGGGGTTGGATA
Downstream 100 bases:
>100_bases AAACATATATTATTCTATTATTCTCAACGGTTTTAACACTTACTTTATAACCATATCTATTGCCAAGTAGTTGAGCCAAA CCCTGGGGTATTATCTCGGG
Product: ABC transporter, membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MAKTVVRGAGDSPTIKKYIDKSPLEELVRRALNREAPVANILIKALSPNAFIDSLSPSGSIGFKSIPVITVSQGFYRVRS TGGVFDVGVEDSGDGVIVVGYIELILEGSGLTILRIPENPVHRIMGIKVTVVKGVDHEVLLIHKSGKRAVDLSEIIVEQG DASRLALVALFNTGSILQARVESIQGAGSSIEKTILVNSTQGSRVEVEDYSYIDNPSVSVESYIRSRLEGGSIAVLRGRG MASRRASGSRIVYGIESLINDAESTAFMHPFLDIHSNNIVEARHYARNYLLTMDKLFYIETRGLKPDEAAMLLVHGFLTR GLSRAAREIILSNISSS
Sequences:
>Translated_337_residues MAKTVVRGAGDSPTIKKYIDKSPLEELVRRALNREAPVANILIKALSPNAFIDSLSPSGSIGFKSIPVITVSQGFYRVRS TGGVFDVGVEDSGDGVIVVGYIELILEGSGLTILRIPENPVHRIMGIKVTVVKGVDHEVLLIHKSGKRAVDLSEIIVEQG DASRLALVALFNTGSILQARVESIQGAGSSIEKTILVNSTQGSRVEVEDYSYIDNPSVSVESYIRSRLEGGSIAVLRGRG MASRRASGSRIVYGIESLINDAESTAFMHPFLDIHSNNIVEARHYARNYLLTMDKLFYIETRGLKPDEAAMLLVHGFLTR GLSRAAREIILSNISSS >Mature_336_residues AKTVVRGAGDSPTIKKYIDKSPLEELVRRALNREAPVANILIKALSPNAFIDSLSPSGSIGFKSIPVITVSQGFYRVRST GGVFDVGVEDSGDGVIVVGYIELILEGSGLTILRIPENPVHRIMGIKVTVVKGVDHEVLLIHKSGKRAVDLSEIIVEQGD ASRLALVALFNTGSILQARVESIQGAGSSIEKTILVNSTQGSRVEVEDYSYIDNPSVSVESYIRSRLEGGSIAVLRGRGM ASRRASGSRIVYGIESLINDAESTAFMHPFLDIHSNNIVEARHYARNYLLTMDKLFYIETRGLKPDEAAMLLVHGFLTRG LSRAAREIILSNISSS
Specific function: Unknown
COG id: COG0719
COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36506; Mature: 36375
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKTVVRGAGDSPTIKKYIDKSPLEELVRRALNREAPVANILIKALSPNAFIDSLSPSGS CCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHEECCCCCCC IGFKSIPVITVSQGFYRVRSTGGVFDVGVEDSGDGVIVVGYIELILEGSGLTILRIPENP CCCCCCCEEEECCCEEEEECCCCEEEECCCCCCCCEEEEEEEEEEECCCCEEEEECCCCH VHRIMGIKVTVVKGVDHEVLLIHKSGKRAVDLSEIIVEQGDASRLALVALFNTGSILQAR HHHHEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEECCCHHHHHH VESIQGAGSSIEKTILVNSTQGSRVEVEDYSYIDNPSVSVESYIRSRLEGGSIAVLRGRG HHHHCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCC MASRRASGSRIVYGIESLINDAESTAFMHPFLDIHSNNIVEARHYARNYLLTMDKLFYIE CCCCCCCCCEEEEEHHHHHCCHHHHEECCHHHEECCCCEEHHHHHHHHHHEEEEEEEEEE TRGLKPDEAAMLLVHGFLTRGLSRAAREIILSNISSS ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AKTVVRGAGDSPTIKKYIDKSPLEELVRRALNREAPVANILIKALSPNAFIDSLSPSGS CCCEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHEECCCCCCC IGFKSIPVITVSQGFYRVRSTGGVFDVGVEDSGDGVIVVGYIELILEGSGLTILRIPENP CCCCCCCEEEECCCEEEEECCCCEEEECCCCCCCCEEEEEEEEEEECCCCEEEEECCCCH VHRIMGIKVTVVKGVDHEVLLIHKSGKRAVDLSEIIVEQGDASRLALVALFNTGSILQAR HHHHEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEECCCHHHHHH VESIQGAGSSIEKTILVNSTQGSRVEVEDYSYIDNPSVSVESYIRSRLEGGSIAVLRGRG HHHHCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCC MASRRASGSRIVYGIESLINDAESTAFMHPFLDIHSNNIVEARHYARNYLLTMDKLFYIE CCCCCCCCCEEEEEHHHHHCCHHHHEECCHHHEECCCCEEHHHHHHHHHHEEEEEEEEEE TRGLKPDEAAMLLVHGFLTRGLSRAAREIILSNISSS ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA