Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 218533214

GI number: 218533214

Start: 5725160

End: 5725861

Strand: Reverse

Name: ydhC [H]

Synonym: Mchl_5342

Alternate gene names: 218533214

Gene position: 5725861-5725160 (Counterclockwise)

Preceding gene: 218533215

Following gene: 218533212

Centisome position: 99.1

GC content: 71.08

Gene sequence:

>702_bases
ATGAGACAGGGTGAGACGAACTCCCCGACCGACCGTGTCGGAACGATCTGCCGATCCCTACGGCGGGCGATCGTGGAGCG
GGCCCTGACCCCGGGAGACCGATTGCCGGAGGACGCGCTCGGCGAGCGGTTCAGCGTCAGCCGGACCATCGCGCGGCAGG
CGCTCGGCCAGCTCGCAGGGGAAGGCTTGGTCGAACTGCGCCGGAACCGCATCGCCGTGGTCGCGAGCCCGAGTTGGGAG
GAGGCGCGCGACACCTTCGACGTGCGCATCAGCCTGGAGCGCCTCGTGGTCCAGCGCCTCGCCGGTCGTCTGAGCGCCGA
GCAACGGGCCGTGCTGGAGGCACATATCGCGGGCGAGGAGCAGGCGAGCGGCGGGCCGGAGGCGGCCTCGATCCGGCTCG
CCACCGAGTTTCACCTGCTGCTCGCCGAGATGACCGGGAGTCCGGTTCTGCGCCGCTACGTCGCCGAACTGGGCTACCGC
TGCGCCCTGATCCTGTCGCTCTACAGCCGGCCGCACTCGTCGGACTGCGCGGTGAGCGAGCACCGGGAGATCGTGGCGGC
GCTCGTCGCGGGCGATGCCGGGCGCGCAACCACACTAATGGATCACCATCTCGACGCGGTGGCGGAGCGGGCGCGCATCC
TCGAGGAGCCCAGGCGCGAGCACGACCTCATCCGCCTGCTCGCGCCCTACATCGACGGCTGA

Upstream 100 bases:

>100_bases
CATTTGTGCATCTGCTGCGAACCGGCGTTCAGGCGGCTCGAAGCGGACACGCGCGGTCGAGAACGTTCGCCCTCTGTCAA
AAGGTTGATGCACGTCCGCG

Downstream 100 bases:

>100_bases
CGCGTCAGGCCGATCCGCCCTGCCGTTCGAGCAGGCGCTCGGCGCTGTCGTTCCACACCTCCATCGAGACGATCAGACCG
TCCCGCAGGGTGAAGCGGTC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MRQGETNSPTDRVGTICRSLRRAIVERALTPGDRLPEDALGERFSVSRTIARQALGQLAGEGLVELRRNRIAVVASPSWE
EARDTFDVRISLERLVVQRLAGRLSAEQRAVLEAHIAGEEQASGGPEAASIRLATEFHLLLAEMTGSPVLRRYVAELGYR
CALILSLYSRPHSSDCAVSEHREIVAALVAGDAGRATTLMDHHLDAVAERARILEEPRREHDLIRLLAPYIDG

Sequences:

>Translated_233_residues
MRQGETNSPTDRVGTICRSLRRAIVERALTPGDRLPEDALGERFSVSRTIARQALGQLAGEGLVELRRNRIAVVASPSWE
EARDTFDVRISLERLVVQRLAGRLSAEQRAVLEAHIAGEEQASGGPEAASIRLATEFHLLLAEMTGSPVLRRYVAELGYR
CALILSLYSRPHSSDCAVSEHREIVAALVAGDAGRATTLMDHHLDAVAERARILEEPRREHDLIRLLAPYIDG
>Mature_233_residues
MRQGETNSPTDRVGTICRSLRRAIVERALTPGDRLPEDALGERFSVSRTIARQALGQLAGEGLVELRRNRIAVVASPSWE
EARDTFDVRISLERLVVQRLAGRLSAEQRAVLEAHIAGEEQASGGPEAASIRLATEFHLLLAEMTGSPVLRRYVAELGYR
CALILSLYSRPHSSDCAVSEHREIVAALVAGDAGRATTLMDHHLDAVAERARILEEPRREHDLIRLLAPYIDG

Specific function: Repressor For The Uxurba Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790780, Length=225, Percent_Identity=28.4444444444444, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1787821, Length=209, Percent_Identity=27.7511961722488, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25657; Mature: 25657

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQGETNSPTDRVGTICRSLRRAIVERALTPGDRLPEDALGERFSVSRTIARQALGQLAG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHH
EGLVELRRNRIAVVASPSWEEARDTFDVRISLERLVVQRLAGRLSAEQRAVLEAHIAGEE
HHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
QASGGPEAASIRLATEFHLLLAEMTGSPVLRRYVAELGYRCALILSLYSRPHSSDCAVSE
CCCCCCCHHEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
HREIVAALVAGDAGRATTLMDHHLDAVAERARILEEPRREHDLIRLLAPYIDG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRQGETNSPTDRVGTICRSLRRAIVERALTPGDRLPEDALGERFSVSRTIARQALGQLAG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHH
EGLVELRRNRIAVVASPSWEEARDTFDVRISLERLVVQRLAGRLSAEQRAVLEAHIAGEE
HHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
QASGGPEAASIRLATEFHLLLAEMTGSPVLRRYVAELGYRCALILSLYSRPHSSDCAVSE
CCCCCCCHHEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
HREIVAALVAGDAGRATTLMDHHLDAVAERARILEEPRREHDLIRLLAPYIDG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]