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The map label for this gene is intD [H]

Identifier: 218533191

GI number: 218533191

Start: 5696052

End: 5697116

Strand: Reverse

Name: intD [H]

Synonym: Mchl_5317

Alternate gene names: 218533191

Gene position: 5697116-5696052 (Counterclockwise)

Preceding gene: 218533192

Following gene: 218533190

Centisome position: 98.6

GC content: 64.51

Gene sequence:

>1065_bases
GTGGCAGGGCTCTATCGCCGCGGCGATGTCTGGTGGGTTCGGTTCAGGCGCAACGGCACCCACGTCCGCAAGAGCGCGAA
GACAACGAGGAAGACAGAGGCGCAAGCCTACCTGGAGCGTTTGCTCGCGGAGCAGGCGGGACGAGCACGCGGTGATGTTC
CGCGGCATCGCTTCGAGGAAGCCGTCGAGCGCTACTTCCAGGAAACGCGCGTCAGACCCAAAACTCTGAGCAGCTACCGG
AGCAACAGCCGGACGTTGGCGCCGAGCTTCAATGCGCTCCACCTCGACGAGATCACGCGCCGGGCCATCGCCGAGTTCGT
CACCGCGAGGAAGCGGACCGGAGTCACGGACACGACGATCCGGCGCGATCTCGCCTTCTTGAGCGTGATTTGCTCGGCGT
GCGGCCGGTGGGGCTGGCTGGACACGAATCCGGTCACAACCTTCGGCAAGCGCGGTCTACGTGAAGGTCGTCCGCGGACG
CGATTCCTGACGCAAGCCGAGTTCGATCGGCTCCTAGCCGCGGCATCGCCGAGCCTCCGCCCCGCAATCACCCTCGCCGT
CGAGACCGGCATGCGTCGTGAGGAACTGTTCGGCCTTACGATTACCGCCATCGACCTGAACCGGCGGGAGGTCCACCTAG
AGCGAACGAAGACGGGATCACCGCGCCGGGTGCCGCTCTCGGACAAGGCCATCACGACCATCAAGGGCCTACTAGACGAG
CCCGGTCGCCCGCGCTCGTCGTACCTTTTTTGCAAGGGCGATGGCTCGCGCTACTGCGACATGAAGAAGGGCTTCGGTGG
GGCCTGTCGGCGGGCCAAGGTTACCAATATGCGATGGCACGATCTGCGCCACACCTTTGCAAGCTGGTACGTCCAGCGCG
GCGGCGATCTCTACCGCTTATCGCGCATCCTGGGCCACTCCGGCCTTCAGATGACCGCGCGGTATGGGCACCTTCGAGTC
GAAGACCTGCACGAGGAGATTGGAAGGGTGGCACAATACCGGCCACAGGAGCGTCTGATCCGGTCGTCGAAACAGGGCGA
GGAGGATCATCTGCCGGACGCTTGA

Upstream 100 bases:

>100_bases
GACCGATCGGTCTGCGTATCCCAGAAGCAGATTCGCTTGCGCGATTCCTGATCCGTGCTCCCCTCGATCTTTGGTCCGAG
GATCATCGTGAGGGTATCGG

Downstream 100 bases:

>100_bases
GAACGCCGAAAGCTCAGGATAACCAAAGGGTTAGAGCGTTGAGAAGCTTTGGATGATTTGGTGGGCGCACTAGGGTTCGA
ACCTAGGACCCGCTGATTAA

Product: integrase family protein

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MAGLYRRGDVWWVRFRRNGTHVRKSAKTTRKTEAQAYLERLLAEQAGRARGDVPRHRFEEAVERYFQETRVRPKTLSSYR
SNSRTLAPSFNALHLDEITRRAIAEFVTARKRTGVTDTTIRRDLAFLSVICSACGRWGWLDTNPVTTFGKRGLREGRPRT
RFLTQAEFDRLLAAASPSLRPAITLAVETGMRREELFGLTITAIDLNRREVHLERTKTGSPRRVPLSDKAITTIKGLLDE
PGRPRSSYLFCKGDGSRYCDMKKGFGGACRRAKVTNMRWHDLRHTFASWYVQRGGDLYRLSRILGHSGLQMTARYGHLRV
EDLHEEIGRVAQYRPQERLIRSSKQGEEDHLPDA

Sequences:

>Translated_354_residues
MAGLYRRGDVWWVRFRRNGTHVRKSAKTTRKTEAQAYLERLLAEQAGRARGDVPRHRFEEAVERYFQETRVRPKTLSSYR
SNSRTLAPSFNALHLDEITRRAIAEFVTARKRTGVTDTTIRRDLAFLSVICSACGRWGWLDTNPVTTFGKRGLREGRPRT
RFLTQAEFDRLLAAASPSLRPAITLAVETGMRREELFGLTITAIDLNRREVHLERTKTGSPRRVPLSDKAITTIKGLLDE
PGRPRSSYLFCKGDGSRYCDMKKGFGGACRRAKVTNMRWHDLRHTFASWYVQRGGDLYRLSRILGHSGLQMTARYGHLRV
EDLHEEIGRVAQYRPQERLIRSSKQGEEDHLPDA
>Mature_353_residues
AGLYRRGDVWWVRFRRNGTHVRKSAKTTRKTEAQAYLERLLAEQAGRARGDVPRHRFEEAVERYFQETRVRPKTLSSYRS
NSRTLAPSFNALHLDEITRRAIAEFVTARKRTGVTDTTIRRDLAFLSVICSACGRWGWLDTNPVTTFGKRGLREGRPRTR
FLTQAEFDRLLAAASPSLRPAITLAVETGMRREELFGLTITAIDLNRREVHLERTKTGSPRRVPLSDKAITTIKGLLDEP
GRPRSSYLFCKGDGSRYCDMKKGFGGACRRAKVTNMRWHDLRHTFASWYVQRGGDLYRLSRILGHSGLQMTARYGHLRVE
DLHEEIGRVAQYRPQERLIRSSKQGEEDHLPDA

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=372, Percent_Identity=28.2258064516129, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40702; Mature: 40571

Theoretical pI: Translated: 11.21; Mature: 11.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLYRRGDVWWVRFRRNGTHVRKSAKTTRKTEAQAYLERLLAEQAGRARGDVPRHRFEE
CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
AVERYFQETRVRPKTLSSYRSNSRTLAPSFNALHLDEITRRAIAEFVTARKRTGVTDTTI
HHHHHHHHHCCCHHHHHHHHCCCCEECCCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHH
RRDLAFLSVICSACGRWGWLDTNPVTTFGKRGLREGRPRTRFLTQAEFDRLLAAASPSLR
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
PAITLAVETGMRREELFGLTITAIDLNRREVHLERTKTGSPRRVPLSDKAITTIKGLLDE
CEEEEEECCCCCHHHHHEEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
PGRPRSSYLFCKGDGSRYCDMKKGFGGACRRAKVTNMRWHDLRHTFASWYVQRGGDLYRL
CCCCCCCEEEECCCCCCCCCHHCCCCHHHHHCHHCCCHHHHHHHHHHHHHHHCCCCHHHH
SRILGHSGLQMTARYGHLRVEDLHEEIGRVAQYRPQERLIRSSKQGEEDHLPDA
HHHHCCCCCEEHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AGLYRRGDVWWVRFRRNGTHVRKSAKTTRKTEAQAYLERLLAEQAGRARGDVPRHRFEE
CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
AVERYFQETRVRPKTLSSYRSNSRTLAPSFNALHLDEITRRAIAEFVTARKRTGVTDTTI
HHHHHHHHHCCCHHHHHHHHCCCCEECCCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHH
RRDLAFLSVICSACGRWGWLDTNPVTTFGKRGLREGRPRTRFLTQAEFDRLLAAASPSLR
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
PAITLAVETGMRREELFGLTITAIDLNRREVHLERTKTGSPRRVPLSDKAITTIKGLLDE
CEEEEEECCCCCHHHHHEEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
PGRPRSSYLFCKGDGSRYCDMKKGFGGACRRAKVTNMRWHDLRHTFASWYVQRGGDLYRL
CCCCCCCEEEECCCCCCCCCHHCCCCHHHHHCHHCCCHHHHHHHHHHHHHHHCCCCHHHH
SRILGHSGLQMTARYGHLRVEDLHEEIGRVAQYRPQERLIRSSKQGEEDHLPDA
HHHHCCCCCEEHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]