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The map label for this gene is ygeR [C]

Identifier: 218532487

GI number: 218532487

Start: 4878223

End: 4879590

Strand: Reverse

Name: ygeR [C]

Synonym: Mchl_4601

Alternate gene names: 218532487

Gene position: 4879590-4878223 (Counterclockwise)

Preceding gene: 218532488

Following gene: 218532485

Centisome position: 84.45

GC content: 72.95

Gene sequence:

>1368_bases
ATGCGGGTTCGGGGGAAAATACTGGGCTTGAGGACGCTGTCGCGCTTCGCCCTCATCGGTATAATCGGCGGTGGCACCGC
TGCTTGTTCGTCGGACGCCTCGCGTCTCGGCGATCCCTTCACCAACCCGTTCGCGTCGCTGACGGGTGAGCCCTCGGCCA
CCGGCAGCCTGCCGAACGACGGCGTCGAGGGTGAGATGGCGCCGGCGCCTGCGATCCGCACGCCGCGCATCCAGTCCCAG
GCGCTGCCCGCTCCCGGCCCGGCCCTGTCGCCGCGCCCCGGCGCGGTCAGCGCCGCCCCGGCCGCGCCCCGGACCGTGAC
CCGCGTCGCGACGGCCGAGCCGATCTCCGGCGGCATGGCGAGCAACGTGGCCGGCCTGAACCCGGATGCGGGCCGCGCGA
TGACGCCGCGTGCCTCCGCCCCGGCGCCGCAGCCCAAGCTCCAGTTCGGCAAGCCCGTCGATAAGGCGGCTGAGAAAGCC
GCGGAGAAGCGCGCCGCCGAAGCCGCTGCCGCGAAGGCGGCCGAGGCCCGCCGCGACGCCGAGCGGCAGGTTGCCGCCGC
CAAGGTCGCCGAGGCCAAGGCGGCCGAAGCCAAGGCCGCGGAGAAGGCGGCGCAGTCGAAGAAGCTCGCCGACGCCAAGG
CGGCCGAGGCGAAGAAGGCGGCGGAGGCGGCCAAGCATCCGCGTCCGGGCCAGAAGGGCGCCGAGAAGGTCGCCAAGGCC
GAGCCGAAGGTCGATCCGAAGGATGCGGCCAAGGAAGCCGCGAAGGAAGCGGCGAAGGCGGAAGCCGCCCGCAAGGCCGA
AGCCGATGCCAAGCAGGCCAAGGCGGACGCCGCCAAGAAGCTCGCCGAGGCCCGCGCCGCGGAAACGGCCGCGAAGGCTG
TTGCCAAGGAGAGCAAGGAGGCCGCCAAGGCGTCCGCGAAGGAAGCGGCACCGGCTGCCCCCGTGAAGGTCGCCAGCGCC
GACGCCTCCGCCCCGATCCCGGCTGCCGCCCCGCAGGCCGCGGCCGAGTCGTTCCGCTGGCCGGCCAAGGGCCGCATCAT
CAATGCCTACGGCTCGTCCGGCAATGAGGGCATCAACATCGCCGTGCCCGAGGGCACGCCGGTCAAGGCCGCCGAGGACG
GCACCGTGGCCTATGCCGGCTCCGACGTGAAGGGCTACGGCAAGCTGGTGCTGGTGCGGCACAACAACGGCTACGTCTCG
GCCTACGCCCATAACGGCGAGCTGGACGTGCGCCCCGGCGAGAAGGTGAAGCGCGGCCAGACCATCGCCAAGTCGGGCGC
CACCGGCAACGTCACCTCGCCCCAGCTCCACTTCGAGCTGCGCAAGGGCGCGACCCCGGTCGATCCGATGCCCCATCTCG
GCGGCTGA

Upstream 100 bases:

>100_bases
CGTGAATCCGATCCCCGCGACGATCTCGGGAACGGTTGCTTAACCTGAATCCCGTTTGAATAGCTCATCACGTTGCGTCA
GTGTTTAAGCGGGTGCGTCG

Downstream 100 bases:

>100_bases
TTGTTTCCGATCCCCGCAGACGAAGGGCGGCTCCTCACGGAGCCGCCCTTTTCGTTTTGGGTCTCGTCAGCGCGGTCGGC
ATGTCCCTCTCCCCGCGTGC

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MRVRGKILGLRTLSRFALIGIIGGGTAACSSDASRLGDPFTNPFASLTGEPSATGSLPNDGVEGEMAPAPAIRTPRIQSQ
ALPAPGPALSPRPGAVSAAPAAPRTVTRVATAEPISGGMASNVAGLNPDAGRAMTPRASAPAPQPKLQFGKPVDKAAEKA
AEKRAAEAAAAKAAEARRDAERQVAAAKVAEAKAAEAKAAEKAAQSKKLADAKAAEAKKAAEAAKHPRPGQKGAEKVAKA
EPKVDPKDAAKEAAKEAAKAEAARKAEADAKQAKADAAKKLAEARAAETAAKAVAKESKEAAKASAKEAAPAAPVKVASA
DASAPIPAAAPQAAAESFRWPAKGRIINAYGSSGNEGINIAVPEGTPVKAAEDGTVAYAGSDVKGYGKLVLVRHNNGYVS
AYAHNGELDVRPGEKVKRGQTIAKSGATGNVTSPQLHFELRKGATPVDPMPHLGG

Sequences:

>Translated_455_residues
MRVRGKILGLRTLSRFALIGIIGGGTAACSSDASRLGDPFTNPFASLTGEPSATGSLPNDGVEGEMAPAPAIRTPRIQSQ
ALPAPGPALSPRPGAVSAAPAAPRTVTRVATAEPISGGMASNVAGLNPDAGRAMTPRASAPAPQPKLQFGKPVDKAAEKA
AEKRAAEAAAAKAAEARRDAERQVAAAKVAEAKAAEAKAAEKAAQSKKLADAKAAEAKKAAEAAKHPRPGQKGAEKVAKA
EPKVDPKDAAKEAAKEAAKAEAARKAEADAKQAKADAAKKLAEARAAETAAKAVAKESKEAAKASAKEAAPAAPVKVASA
DASAPIPAAAPQAAAESFRWPAKGRIINAYGSSGNEGINIAVPEGTPVKAAEDGTVAYAGSDVKGYGKLVLVRHNNGYVS
AYAHNGELDVRPGEKVKRGQTIAKSGATGNVTSPQLHFELRKGATPVDPMPHLGG
>Mature_455_residues
MRVRGKILGLRTLSRFALIGIIGGGTAACSSDASRLGDPFTNPFASLTGEPSATGSLPNDGVEGEMAPAPAIRTPRIQSQ
ALPAPGPALSPRPGAVSAAPAAPRTVTRVATAEPISGGMASNVAGLNPDAGRAMTPRASAPAPQPKLQFGKPVDKAAEKA
AEKRAAEAAAAKAAEARRDAERQVAAAKVAEAKAAEAKAAEKAAQSKKLADAKAAEAKKAAEAAKHPRPGQKGAEKVAKA
EPKVDPKDAAKEAAKEAAKAEAARKAEADAKQAKADAAKKLAEARAAETAAKAVAKESKEAAKASAKEAAPAAPVKVASA
DASAPIPAAAPQAAAESFRWPAKGRIINAYGSSGNEGINIAVPEGTPVKAAEDGTVAYAGSDVKGYGKLVLVRHNNGYVS
AYAHNGELDVRPGEKVKRGQTIAKSGATGNVTSPQLHFELRKGATPVDPMPHLGG

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=162, Percent_Identity=38.8888888888889, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1789099, Length=118, Percent_Identity=45.7627118644068, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=38.3333333333333, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081989, Length=97, Percent_Identity=42.2680412371134, Blast_Score=79, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 45771; Mature: 45771

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00318 HMG_COA_REDUCTASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVRGKILGLRTLSRFALIGIIGGGTAACSSDASRLGDPFTNPFASLTGEPSATGSLPND
CCCCCHHHHHHHHHHHHEEEEECCCCHHHCCCHHHCCCCCCCHHHHCCCCCCCCCCCCCC
GVEGEMAPAPAIRTPRIQSQALPAPGPALSPRPGAVSAAPAAPRTVTRVATAEPISGGMA
CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHH
SNVAGLNPDAGRAMTPRASAPAPQPKLQFGKPVDKAAEKAAEKRAAEAAAAKAAEARRDA
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERQVAAAKVAEAKAAEAKAAEKAAQSKKLADAKAAEAKKAAEAAKHPRPGQKGAEKVAKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
EPKVDPKDAAKEAAKEAAKAEAARKAEADAKQAKADAAKKLAEARAAETAAKAVAKESKE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAKASAKEAAPAAPVKVASADASAPIPAAAPQAAAESFRWPAKGRIINAYGSSGNEGINI
HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCCEEE
AVPEGTPVKAAEDGTVAYAGSDVKGYGKLVLVRHNNGYVSAYAHNGELDVRPGEKVKRGQ
ECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCEEEEEEECCEEECCCCHHHHHCC
TIAKSGATGNVTSPQLHFELRKGATPVDPMPHLGG
HHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MRVRGKILGLRTLSRFALIGIIGGGTAACSSDASRLGDPFTNPFASLTGEPSATGSLPND
CCCCCHHHHHHHHHHHHEEEEECCCCHHHCCCHHHCCCCCCCHHHHCCCCCCCCCCCCCC
GVEGEMAPAPAIRTPRIQSQALPAPGPALSPRPGAVSAAPAAPRTVTRVATAEPISGGMA
CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHH
SNVAGLNPDAGRAMTPRASAPAPQPKLQFGKPVDKAAEKAAEKRAAEAAAAKAAEARRDA
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERQVAAAKVAEAKAAEAKAAEKAAQSKKLADAKAAEAKKAAEAAKHPRPGQKGAEKVAKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
EPKVDPKDAAKEAAKEAAKAEAARKAEADAKQAKADAAKKLAEARAAETAAKAVAKESKE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAKASAKEAAPAAPVKVASADASAPIPAAAPQAAAESFRWPAKGRIINAYGSSGNEGINI
HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCCEEE
AVPEGTPVKAAEDGTVAYAGSDVKGYGKLVLVRHNNGYVSAYAHNGELDVRPGEKVKRGQ
ECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCEEEEEEECCEEECCCCHHHHHCC
TIAKSGATGNVTSPQLHFELRKGATPVDPMPHLGG
HHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]