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The map label for this gene is secD [H]

Identifier: 218532483

GI number: 218532483

Start: 4873681

End: 4874625

Strand: Reverse

Name: secD [H]

Synonym: Mchl_4597

Alternate gene names: 218532483

Gene position: 4874625-4873681 (Counterclockwise)

Preceding gene: 218532484

Following gene: 218532482

Centisome position: 84.37

GC content: 66.14

Gene sequence:

>945_bases
ATGCGCCTGCTTCGCCTCTGGCCCGACGAATCGCATTTCGACTTCATGCGGTTCCGGCGCGTCACCTTCCCGCTCTCGGC
GGTGATGTCGGTCGTGACCCTGGTGCTGTTCATCACCGTCGGGCTTAATTACGGCATCGACTTCAAGGGCGGCACCCTGG
TCGAGCTTCAGGCCAAGGCCGGGCGGACCGCGGACGTCGCCGAGATCCGCCACACCGCCAACGGCTTCGGCTTCGGCGAG
ACCGAGGTGCAGGAACTCGGCGGCGAGGGTCAGGTGCTGGTGCGCTTCCCGCTCCAGGCCGGCGAGCAGGGCCAGACCGC
GGTGATGCAGAAGGCGCACGCCGCCTTCGACGCGAGCTACGATTTCCGCCGCACCGAGACCGTGGGGCCGCGCGTCTCGG
GTGAGCTGGTGCAGTCCGGCACGATCGGCGTCGTGCTCTCGGTGCTGGCGGTGCTGCTCTACCTGTGGTTCCGCTTCGAG
CGGGAGCTGGCGCTCGGCGCCATCGTCGGCACCCTGCACGACATCGTGCTGACGGTCGGCGTGTTCATCATCACCCGCAT
CGAGTTCAACATGACCTCGATCGCGGCGATCCTCACCATCGTCGGCTACTCGCTCAACGAGACCGTGGTGGTGTTCGATC
GGACCCGCGAGCTGATGCGCCGCTACAAGACGATTCCGGTGGTGGAACTCCTCAACCTCTCGATCAACTCCACCATGTCG
CGCACGGTGATGACCTCGCTCTCCACCACCCTGTCGCTGGTGGCGCTGGTGCTGTTCGGCGGCGAGGCGATCAAGGGCTT
TGCCGTGGTGATGCTCTGCGGCGTGGTGATCTGCACCTACTCCGCGATCTTCGTCTCGACCCCGTCGCTGATCTATATCG
GCTTGCGTCTGTCTGGTGCGAAGGCGTCGCAGCGCGAGTCGGGCCTGCCGCAGGCGGCCGAGTAG

Upstream 100 bases:

>100_bases
GGGGCGCCGCCGCCTCGTTCCCGGCGCGGCCCACTCGCCGCGCGAAAGCTGAAATCTCAGGGGATGCGCTCGGAGCGCCC
CCTTCGCTTCGAGACCGACC

Downstream 100 bases:

>100_bases
GGCGCGGCGTGCGACGGGAGGCGCGAGACCGATCCGGGACGTCTTTCTCCGCCCCGGCGGTTGAGAGAGACGCCCGCGCT
TCCGACATCCTCCGGTACGG

Product: protein-export membrane protein SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MRLLRLWPDESHFDFMRFRRVTFPLSAVMSVVTLVLFITVGLNYGIDFKGGTLVELQAKAGRTADVAEIRHTANGFGFGE
TEVQELGGEGQVLVRFPLQAGEQGQTAVMQKAHAAFDASYDFRRTETVGPRVSGELVQSGTIGVVLSVLAVLLYLWFRFE
RELALGAIVGTLHDIVLTVGVFIITRIEFNMTSIAAILTIVGYSLNETVVVFDRTRELMRRYKTIPVVELLNLSINSTMS
RTVMTSLSTTLSLVALVLFGGEAIKGFAVVMLCGVVICTYSAIFVSTPSLIYIGLRLSGAKASQRESGLPQAAE

Sequences:

>Translated_314_residues
MRLLRLWPDESHFDFMRFRRVTFPLSAVMSVVTLVLFITVGLNYGIDFKGGTLVELQAKAGRTADVAEIRHTANGFGFGE
TEVQELGGEGQVLVRFPLQAGEQGQTAVMQKAHAAFDASYDFRRTETVGPRVSGELVQSGTIGVVLSVLAVLLYLWFRFE
RELALGAIVGTLHDIVLTVGVFIITRIEFNMTSIAAILTIVGYSLNETVVVFDRTRELMRRYKTIPVVELLNLSINSTMS
RTVMTSLSTTLSLVALVLFGGEAIKGFAVVMLCGVVICTYSAIFVSTPSLIYIGLRLSGAKASQRESGLPQAAE
>Mature_314_residues
MRLLRLWPDESHFDFMRFRRVTFPLSAVMSVVTLVLFITVGLNYGIDFKGGTLVELQAKAGRTADVAEIRHTANGFGFGE
TEVQELGGEGQVLVRFPLQAGEQGQTAVMQKAHAAFDASYDFRRTETVGPRVSGELVQSGTIGVVLSVLAVLLYLWFRFE
RELALGAIVGTLHDIVLTVGVFIITRIEFNMTSIAAILTIVGYSLNETVVVFDRTRELMRRYKTIPVVELLNLSINSTMS
RTVMTSLSTTLSLVALVLFGGEAIKGFAVVMLCGVVICTYSAIFVSTPSLIYIGLRLSGAKASQRESGLPQAAE

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=306, Percent_Identity=32.6797385620915, Blast_Score=191, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34284; Mature: 34284

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLRLWPDESHFDFMRFRRVTFPLSAVMSVVTLVLFITVGLNYGIDFKGGTLVELQAKA
CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCC
GRTADVAEIRHTANGFGFGETEVQELGGEGQVLVRFPLQAGEQGQTAVMQKAHAAFDASY
CCCHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
DFRRTETVGPRVSGELVQSGTIGVVLSVLAVLLYLWFRFERELALGAIVGTLHDIVLTVG
CCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFIITRIEFNMTSIAAILTIVGYSLNETVVVFDRTRELMRRYKTIPVVELLNLSINSTMS
HHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCHHHHHHCHHHHHHH
RTVMTSLSTTLSLVALVLFGGEAIKGFAVVMLCGVVICTYSAIFVSTPSLIYIGLRLSGA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
KASQRESGLPQAAE
CCCHHHCCCCCCCC
>Mature Secondary Structure
MRLLRLWPDESHFDFMRFRRVTFPLSAVMSVVTLVLFITVGLNYGIDFKGGTLVELQAKA
CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCC
GRTADVAEIRHTANGFGFGETEVQELGGEGQVLVRFPLQAGEQGQTAVMQKAHAAFDASY
CCCHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
DFRRTETVGPRVSGELVQSGTIGVVLSVLAVLLYLWFRFERELALGAIVGTLHDIVLTVG
CCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFIITRIEFNMTSIAAILTIVGYSLNETVVVFDRTRELMRRYKTIPVVELLNLSINSTMS
HHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCHHHHHHCHHHHHHH
RTVMTSLSTTLSLVALVLFGGEAIKGFAVVMLCGVVICTYSAIFVSTPSLIYIGLRLSGA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
KASQRESGLPQAAE
CCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9826342 [H]