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The map label for this gene is secD [H]

Identifier: 218532484

GI number: 218532484

Start: 4874725

End: 4876323

Strand: Reverse

Name: secD [H]

Synonym: Mchl_4598

Alternate gene names: 218532484

Gene position: 4876323-4874725 (Counterclockwise)

Preceding gene: 218532485

Following gene: 218532483

Centisome position: 84.4

GC content: 67.79

Gene sequence:

>1599_bases
ATGTTGCGCTTCTCGAGAACCAAGATTTTCGCGACCCTGGCCATCATCCTGATCGGTCTGAGCCTCGCAGTGCCGAGCTT
CTTCTCGAAGGAGCAGCGCGAGGCCTTCGTCAACGCGCTGCCGAAATCGATCCAATGGATGGTGCCGACCCGGGCGATCG
TGCTCGGCCTCGACCTCCAGGGCGGCTCGCAGATCCTGCTGGAAATCGACCAGCCCGACCTCGTCCGCTCGATGGTCACC
GGCCTGCGCGACGACGTGCGCCGCATCCTGCGCGAGGCCGCGGTCTCGCCGGACGGCGGCATCCGCGTCATCAACCGCGG
CGTCGAGCTGCGCATCCCCGATGCGGCGGCCCGCGCGAAGGTGATGCCGAAGCTGCGCGAACTCGCAGCCCCCATCAACA
ACCCGCTCGCCGCCGGCGGCCAGACCCTCACCGTCAACGAGGCCGAGAACGGCACGATCCAGCTCGTCCTCACCGAGGCC
GGCATCAACGACCGCACCCGCCGCGCCGTCAGCCAGGCCATCGAGGTCGTGCGCAAGCGCATCGATTTCGGCGGCACCAA
GGAGCCGTCGATCCAGCAGCAGGGTGCCAGCCGCATCCTCGTCCAGGTGCCGGGCCTGCAGAACCCGCAGGAGCTGGAGG
ACCAGCTCGGCAAGACCGCCAAGCTCGAATTCCGGATGCTGGCCGATTCGCCCTCGGGCGACGTCGACATGCTCACCTCC
AAGGACGAGGGCGGCGCCAAGGTGCCGGTCGAGCGCCGGGTCATGGCCGATGGCAGCGATCTCACCGACGCCCAGCCCGC
CTTCGACCCGCAGACCCACGAGCCGATGGTGAGCTTCAAGTTCAACCTGCGTGGCGCCCAGCGCTTCGGTCAGGCGACCT
CGGAGAATGTCGGCCGGCGCATGGCGATCGTGCTCGACAACGTGATCCAGTCGGCCCCTGTGATCCGCTCGGCGATCACC
GGCGGTACCGGCCAGATCACCGGCAACTTCACCGTCAAGGACGCCAACGACCTCTCGGTGCTGCTGCGGGCCGGCGCGCT
GCCGGCCAAGCTTACCGTGGTCGAGCGCCGCGTCGTCGGTCCCGGCCTCGGCCGCGACTCGATCGAGGCCGGCAAGATGG
CGACCCTGGTCGCGGGCGGCCTCGTCATTGCCTTCATGTTCGCGACCTACGGCACCTTCGGCTTCATCGCGAACATCGCC
CTGATCGTGCACGTCGGCCTGATCCTCGGCCTGATGTCGGTGCTGGAGGCGACGATGACGCTGCCGGGCATCGCCGGCAT
CGTGCTCACCATCGGCACGGCGGTCGATTCGAACGTGCTGATCTACGAGCGCATGCGCGAGGAAGCCCGCGGCGGACGCT
CCCTGGTCTCGGCGCTTCAGGCCGGCTTCGACCGGGCGTTCGCCACCATCATCGACTCGAACTCGACCATGGCGATCGCC
GCCCTGCTCCTGTTCTTCATGGGCTCGGGCCCGGTGAAGGGCTTCGCCGTGGTGTTCATCCTCGGCATCCTCACCACCGT
TATCACCGCCGTGACGCTGACGCGCATGATGATCGCGCTGTGGTACAACTGGTTCCGGCCCAAGGCCCTGCCGTTCTAG

Upstream 100 bases:

>100_bases
CGCGTCAAGGGCGCCCCGGTCAAGGCCTCCTGAGAGGTCACATGAGGGTGCCGGCGCACAGGCCCGGCACCTTTCGGTAA
ACTCAGTCGGAACCGGGCGG

Downstream 100 bases:

>100_bases
GGGCGCCGCCGCCTCGTTCCCGGCGCGGCCCACTCGCCGCGCGAAAGCTGAAATCTCAGGGGATGCGCTCGGAGCGCCCC
CTTCGCTTCGAGACCGACCA

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MLRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQGGSQILLEIDQPDLVRSMVT
GLRDDVRRILREAAVSPDGGIRVINRGVELRIPDAAARAKVMPKLRELAAPINNPLAAGGQTLTVNEAENGTIQLVLTEA
GINDRTRRAVSQAIEVVRKRIDFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLADSPSGDVDMLTS
KDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVGRRMAIVLDNVIQSAPVIRSAIT
GGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRVVGPGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIA
LIVHVGLILGLMSVLEATMTLPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMAIA
ALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF

Sequences:

>Translated_532_residues
MLRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQGGSQILLEIDQPDLVRSMVT
GLRDDVRRILREAAVSPDGGIRVINRGVELRIPDAAARAKVMPKLRELAAPINNPLAAGGQTLTVNEAENGTIQLVLTEA
GINDRTRRAVSQAIEVVRKRIDFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLADSPSGDVDMLTS
KDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVGRRMAIVLDNVIQSAPVIRSAIT
GGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRVVGPGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIA
LIVHVGLILGLMSVLEATMTLPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMAIA
ALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF
>Mature_532_residues
MLRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQGGSQILLEIDQPDLVRSMVT
GLRDDVRRILREAAVSPDGGIRVINRGVELRIPDAAARAKVMPKLRELAAPINNPLAAGGQTLTVNEAENGTIQLVLTEA
GINDRTRRAVSQAIEVVRKRIDFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLADSPSGDVDMLTS
KDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVGRRMAIVLDNVIQSAPVIRSAIT
GGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRVVGPGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIA
LIVHVGLILGLMSVLEATMTLPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMAIA
ALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=526, Percent_Identity=34.2205323193916, Blast_Score=256, Evalue=2e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57114; Mature: 57114

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCEEEEEEEECC
GGSQILLEIDQPDLVRSMVTGLRDDVRRILREAAVSPDGGIRVINRGVELRIPDAAARAK
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCHHHHHH
VMPKLRELAAPINNPLAAGGQTLTVNEAENGTIQLVLTEAGINDRTRRAVSQAIEVVRKR
HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH
IDFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLADSPSGDVDMLTS
HCCCCCCCCCHHHCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEC
KDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVGRR
CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHCCHHHHHHHHH
MAIVLDNVIQSAPVIRSAITGGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRVVG
HHHHHHHHHHHCHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHCC
PGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIALIVHVGLILGLMSVLEATMT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMAIA
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
ALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCEEEEEEEECC
GGSQILLEIDQPDLVRSMVTGLRDDVRRILREAAVSPDGGIRVINRGVELRIPDAAARAK
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCHHHHHH
VMPKLRELAAPINNPLAAGGQTLTVNEAENGTIQLVLTEAGINDRTRRAVSQAIEVVRKR
HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH
IDFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLADSPSGDVDMLTS
HCCCCCCCCCHHHCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEC
KDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVGRR
CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHCCHHHHHHHHH
MAIVLDNVIQSAPVIRSAITGGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRVVG
HHHHHHHHHHHCHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHCC
PGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIALIVHVGLILGLMSVLEATMT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMAIA
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
ALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]