| Definition | Methylobacterium chloromethanicum CM4, complete genome. |
|---|---|
| Accession | NC_011757 |
| Length | 5,777,908 |
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The map label for this gene is bfrD [H]
Identifier: 218532283
GI number: 218532283
Start: 4644158
End: 4646428
Strand: Reverse
Name: bfrD [H]
Synonym: Mchl_4395
Alternate gene names: 218532283
Gene position: 4646428-4644158 (Counterclockwise)
Preceding gene: 218532284
Following gene: 218532282
Centisome position: 80.42
GC content: 65.87
Gene sequence:
>2271_bases ATGAGAACCGCTCGCCAGAGCCGCGCTGTGCTGCGGCCGATGCTGCTTGGCTCCGTCGCCTGTACAAGCATCGTTGCGGC TTTCATCCATCCGGCGCGGGCGCAAGTCACGGACATCAACACCGGCCTGCCGACCGCTCAGGCGGTCCATCCGCTCGCCG CGTCTCCCTCGGTCGGCGGCGTCACCCTCGATATGATCAGCGTCGCCGGGTCCGGGCTCGGGCGCGGCCTCGTCGTCGAC AGCTCGGGTTCGCAGGTCGGCTACCTCGCCCGGCGCCTGCGCTCCTCGACCAAGACCGATACGCCGCTGATCGACACGCC GCAGGCGATCTCGGTGGTGACGGAGGCGCAGATCCGCGACCAGAACGTGCAGAGCATCGGCGAGGCGCTGCGCTACGTCC CCGGCGTCGCCATCGCCCAGGGCGAGGGCCACCGCGACGAGATCCTGATCCGCGGCCAGCGCACGACGGCCGACTTCTTC GTCAACGGCATCCGCGACGACGCGCGCTACTTCCGAGACCTCTACAACACCCAGCGCATCGAGGTGTTGAAGGGCCCCAA CGCGATGATCTTCGGCCGCGGCGGCGGCGGCGGCGTGGTCAACCGCGTGCTCAAGGAAGCCGACGGGGTGCCGATCCGCG AGGTGCTGGTGCAGGGCGGCCAATTCGGGAACAAGCGCATGGCGGTCGATCTCGGCGACCGCATCTCCGACACCGCCTTC TTCCGCCTCACCGGCGTGTTCGAAGATACCGGCACCTATCGCGACTTCATCGACATCCGCCGCTACGGCGTGAACCCGAC GATGACCTTCCTGCTCGGGCCGCAGACGACGCTGCGCCTGTCCTACGAGTACTTCTCCGACAACCGCATCGCCGACCGCG GCATCCCCTCGCAGTTCGGGCGCCCCTGGCGCTACCGCGAGAACACCAGCACGCTGTTCGGCGCGCCCCTCATCTCAAAC GGCTTCGTCGATGCCCATATCGGCAACGCGCAGCTCGACCACGTCTTCGAGAACGGCGTCGTGATGCGCAGCCAGACGCG GATCGCCGACTACGCGAAGTACCATCAGAACGCCTACCCCAACAGCCCGGTCAGTGCCGACGAGACCGCGTTCGTAATGC GTGGCTACGGCAGCCAGACCGACCGCACGAACTATTTCAATCAGACCGACTTCACCTACAAATTCAACACCGGACCCCTT GCGCACACCGTGGTGGCCGGCCTGGAACTCGGTTTTCAGGAGGGGATCGACTTCCGGCGCGACTTCATCTGGAATTCGAC CGGCACCCGCAACCTCCCCGTCAATCCCTTCGCGCCGACCACGACCGAGGGGGCAACGCTGCGGAATCTCGCGTCGGGCC GCAACAACACCTATCGGCTCGGCGTGTTCTCCGCCTTCGCCCAGGACCAGATCGAGATCGACGAGCATCTGCAGTTCATC GTGGGTGCACGCTTCGACCGCTTCGATTTCCAATCGCGCGACCGTCGTCCCGACGCCGCGACTGGCCTCCCTGCCCAGCC GAACAGCCGCATCGACAATCTCGTCTCGCCGCGGGTCGGCGTCGTGGTGAAACCGCTGCCGAATCTCGCCTTCTACGGCA GCTATTCGGTGTCCTTCCTGCCGAGCGCGGGCGACCAGTTCCGCGTGCTGGACCCGACAACCGCTTTGTCCGCACCCGAG CGGTTCGAGAACGCGGAAATCGGCGTGAAATACGAGATCACGCCGGCCCTGATCCTCACCGCTGCGCTGTTCAACCTCGA TCGCGACAACCAGCCGATCCCCTCATCCACCGAAGCGGGTTTCTCCGCCGGCCCGGGCAAGACGAACACAAGGGGGGCCG AGATCGGCATTGCCGGCTACGCGACCGATTGGTGGCAGATCTCCGGCGGCTACGCCTATACCGAGCCGCGCATCGTCGCC GACATCGATGACGACGGCGACGTGATCCGGGCCGGCAACCTCGTCGGCGGCGTTCCGCTCAACACCTTCAGCCTGTGGAA CAAATTCGACATCGGCGAGCGCTTCTCCGTCGGCGTCGGCTACCTCTACCAGGATGCCAGCTTCGCATCGTCGGACAACG CGGTGCGCCTGCCGAGCTTCTCGCGCTTCGATGCCGGCGTGTTCTACGCGTTCAGCGAGAGCATGCGCGCTCAGGTCAAC ATCGAGAATCTGTTCGACCGGCGCTACGTCATCTCCGCGCACAACAACAACAACAACATCCTGCCCGGCGCGCCCCGGAC CGTGCGCTTCCAGATCATCGCGCGGTTCTGA
Upstream 100 bases:
>100_bases TATCAAATCGGTAAATCTGTAATAATTCAACCTTCGCCAAGCTGAGCCGGATTAGGGCCAAGACTTCCCCGTCTATTCTA ATAAAATAAGGGGGAAGCTT
Downstream 100 bases:
>100_bases CCCGCGAGGGCGCCCGAGGCTTCCGCGCCCGCGCGCCCTCCCCTAACACCGGGGCGACGCCCGCCCTGCGGGCGCCTCGC CCCGGAGCCCCCATGTCCGA
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]
Number of amino acids: Translated: 756; Mature: 756
Protein sequence:
>756_residues MRTARQSRAVLRPMLLGSVACTSIVAAFIHPARAQVTDINTGLPTAQAVHPLAASPSVGGVTLDMISVAGSGLGRGLVVD SSGSQVGYLARRLRSSTKTDTPLIDTPQAISVVTEAQIRDQNVQSIGEALRYVPGVAIAQGEGHRDEILIRGQRTTADFF VNGIRDDARYFRDLYNTQRIEVLKGPNAMIFGRGGGGGVVNRVLKEADGVPIREVLVQGGQFGNKRMAVDLGDRISDTAF FRLTGVFEDTGTYRDFIDIRRYGVNPTMTFLLGPQTTLRLSYEYFSDNRIADRGIPSQFGRPWRYRENTSTLFGAPLISN GFVDAHIGNAQLDHVFENGVVMRSQTRIADYAKYHQNAYPNSPVSADETAFVMRGYGSQTDRTNYFNQTDFTYKFNTGPL AHTVVAGLELGFQEGIDFRRDFIWNSTGTRNLPVNPFAPTTTEGATLRNLASGRNNTYRLGVFSAFAQDQIEIDEHLQFI VGARFDRFDFQSRDRRPDAATGLPAQPNSRIDNLVSPRVGVVVKPLPNLAFYGSYSVSFLPSAGDQFRVLDPTTALSAPE RFENAEIGVKYEITPALILTAALFNLDRDNQPIPSSTEAGFSAGPGKTNTRGAEIGIAGYATDWWQISGGYAYTEPRIVA DIDDDGDVIRAGNLVGGVPLNTFSLWNKFDIGERFSVGVGYLYQDASFASSDNAVRLPSFSRFDAGVFYAFSESMRAQVN IENLFDRRYVISAHNNNNNILPGAPRTVRFQIIARF
Sequences:
>Translated_756_residues MRTARQSRAVLRPMLLGSVACTSIVAAFIHPARAQVTDINTGLPTAQAVHPLAASPSVGGVTLDMISVAGSGLGRGLVVD SSGSQVGYLARRLRSSTKTDTPLIDTPQAISVVTEAQIRDQNVQSIGEALRYVPGVAIAQGEGHRDEILIRGQRTTADFF VNGIRDDARYFRDLYNTQRIEVLKGPNAMIFGRGGGGGVVNRVLKEADGVPIREVLVQGGQFGNKRMAVDLGDRISDTAF FRLTGVFEDTGTYRDFIDIRRYGVNPTMTFLLGPQTTLRLSYEYFSDNRIADRGIPSQFGRPWRYRENTSTLFGAPLISN GFVDAHIGNAQLDHVFENGVVMRSQTRIADYAKYHQNAYPNSPVSADETAFVMRGYGSQTDRTNYFNQTDFTYKFNTGPL AHTVVAGLELGFQEGIDFRRDFIWNSTGTRNLPVNPFAPTTTEGATLRNLASGRNNTYRLGVFSAFAQDQIEIDEHLQFI VGARFDRFDFQSRDRRPDAATGLPAQPNSRIDNLVSPRVGVVVKPLPNLAFYGSYSVSFLPSAGDQFRVLDPTTALSAPE RFENAEIGVKYEITPALILTAALFNLDRDNQPIPSSTEAGFSAGPGKTNTRGAEIGIAGYATDWWQISGGYAYTEPRIVA DIDDDGDVIRAGNLVGGVPLNTFSLWNKFDIGERFSVGVGYLYQDASFASSDNAVRLPSFSRFDAGVFYAFSESMRAQVN IENLFDRRYVISAHNNNNNILPGAPRTVRFQIIARF >Mature_756_residues MRTARQSRAVLRPMLLGSVACTSIVAAFIHPARAQVTDINTGLPTAQAVHPLAASPSVGGVTLDMISVAGSGLGRGLVVD SSGSQVGYLARRLRSSTKTDTPLIDTPQAISVVTEAQIRDQNVQSIGEALRYVPGVAIAQGEGHRDEILIRGQRTTADFF VNGIRDDARYFRDLYNTQRIEVLKGPNAMIFGRGGGGGVVNRVLKEADGVPIREVLVQGGQFGNKRMAVDLGDRISDTAF FRLTGVFEDTGTYRDFIDIRRYGVNPTMTFLLGPQTTLRLSYEYFSDNRIADRGIPSQFGRPWRYRENTSTLFGAPLISN GFVDAHIGNAQLDHVFENGVVMRSQTRIADYAKYHQNAYPNSPVSADETAFVMRGYGSQTDRTNYFNQTDFTYKFNTGPL AHTVVAGLELGFQEGIDFRRDFIWNSTGTRNLPVNPFAPTTTEGATLRNLASGRNNTYRLGVFSAFAQDQIEIDEHLQFI VGARFDRFDFQSRDRRPDAATGLPAQPNSRIDNLVSPRVGVVVKPLPNLAFYGSYSVSFLPSAGDQFRVLDPTTALSAPE RFENAEIGVKYEITPALILTAALFNLDRDNQPIPSSTEAGFSAGPGKTNTRGAEIGIAGYATDWWQISGGYAYTEPRIVA DIDDDGDVIRAGNLVGGVPLNTFSLWNKFDIGERFSVGVGYLYQDASFASSDNAVRLPSFSRFDAGVFYAFSESMRAQVN IENLFDRRYVISAHNNNNNILPGAPRTVRFQIIARF
Specific function: Probably involved in iron transport [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787024, Length=730, Percent_Identity=27.6712328767123, Blast_Score=211, Evalue=2e-55, Organism=Escherichia coli, GI1786344, Length=724, Percent_Identity=25.2762430939227, Blast_Score=154, Evalue=1e-38, Organism=Escherichia coli, GI1787344, Length=734, Percent_Identity=22.7520435967302, Blast_Score=96, Evalue=9e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 82988; Mature: 82988
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTARQSRAVLRPMLLGSVACTSIVAAFIHPARAQVTDINTGLPTAQAVHPLAASPSVGG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCCCCCCCCC VTLDMISVAGSGLGRGLVVDSSGSQVGYLARRLRSSTKTDTPLIDTPQAISVVTEAQIRD EEEEEHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC QNVQSIGEALRYVPGVAIAQGEGHRDEILIRGQRTTADFFVNGIRDDARYFRDLYNTQRI CHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHHCCCEE EVLKGPNAMIFGRGGGGGVVNRVLKEADGVPIREVLVQGGQFGNKRMAVDLGDRISDTAF EEEECCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCCEE FRLTGVFEDTGTYRDFIDIRRYGVNPTMTFLLGPQTTLRLSYEYFSDNRIADRGIPSQFG EEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCHHHC RPWRYRENTSTLFGAPLISNGFVDAHIGNAQLDHVFENGVVMRSQTRIADYAKYHQNAYP CCCEECCCCCEEECCCHHCCCEEEEECCCCHHHHHHHCCEEEECCHHHHHHHHHHCCCCC NSPVSADETAFVMRGYGSQTDRTNYFNQTDFTYKFNTGPLAHTVVAGLELGFQEGIDFRR CCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCHHHCCCHHH DFIWNSTGTRNLPVNPFAPTTTEGATLRNLASGRNNTYRLGVFSAFAQDQIEIDEHLQFI HHEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEHHHHCCCCCHHHHHHHH VGARFDRFDFQSRDRRPDAATGLPAQPNSRIDNLVSPRVGVVVKPLPNLAFYGSYSVSFL HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCEEEECCCEEEEE PSAGDQFRVLDPTTALSAPERFENAEIGVKYEITPALILTAALFNLDRDNQPIPSSTEAG CCCCCCEEEECCHHHCCCCHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC FSAGPGKTNTRGAEIGIAGYATDWWQISGGYAYTEPRIVADIDDDGDVIRAGNLVGGVPL CCCCCCCCCCCCCEEEEEEECCCEEEECCCEEECCCEEEEEECCCCCEEEECCEECCCCC NTFSLWNKFDIGERFSVGVGYLYQDASFASSDNAVRLPSFSRFDAGVFYAFSESMRAQVN CHHHHCCCCCCCCEEECCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEEECCCCEEEEE IENLFDRRYVISAHNNNNNILPGAPRTVRFQIIARF HHHHCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEC >Mature Secondary Structure MRTARQSRAVLRPMLLGSVACTSIVAAFIHPARAQVTDINTGLPTAQAVHPLAASPSVGG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCCCCCCCCC VTLDMISVAGSGLGRGLVVDSSGSQVGYLARRLRSSTKTDTPLIDTPQAISVVTEAQIRD EEEEEHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC QNVQSIGEALRYVPGVAIAQGEGHRDEILIRGQRTTADFFVNGIRDDARYFRDLYNTQRI CHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHHCCCEE EVLKGPNAMIFGRGGGGGVVNRVLKEADGVPIREVLVQGGQFGNKRMAVDLGDRISDTAF EEEECCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCCEE FRLTGVFEDTGTYRDFIDIRRYGVNPTMTFLLGPQTTLRLSYEYFSDNRIADRGIPSQFG EEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCHHHC RPWRYRENTSTLFGAPLISNGFVDAHIGNAQLDHVFENGVVMRSQTRIADYAKYHQNAYP CCCEECCCCCEEECCCHHCCCEEEEECCCCHHHHHHHCCEEEECCHHHHHHHHHHCCCCC NSPVSADETAFVMRGYGSQTDRTNYFNQTDFTYKFNTGPLAHTVVAGLELGFQEGIDFRR CCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCHHHCCCHHH DFIWNSTGTRNLPVNPFAPTTTEGATLRNLASGRNNTYRLGVFSAFAQDQIEIDEHLQFI HHEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEHHHHCCCCCHHHHHHHH VGARFDRFDFQSRDRRPDAATGLPAQPNSRIDNLVSPRVGVVVKPLPNLAFYGSYSVSFL HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCEEEECCCEEEEE PSAGDQFRVLDPTTALSAPERFENAEIGVKYEITPALILTAALFNLDRDNQPIPSSTEAG CCCCCCEEEECCHHHCCCCHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC FSAGPGKTNTRGAEIGIAGYATDWWQISGGYAYTEPRIVADIDDDGDVIRAGNLVGGVPL CCCCCCCCCCCCCEEEEEEECCCEEEECCCEEECCCEEEEEECCCCCEEEECCEECCCCC NTFSLWNKFDIGERFSVGVGYLYQDASFASSDNAVRLPSFSRFDAGVFYAFSESMRAQVN CHHHHCCCCCCCCEEECCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEEECCCCEEEEE IENLFDRRYVISAHNNNNNILPGAPRTVRFQIIARF HHHHCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12910271; 10079522 [H]