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The map label for this gene is cydA [H]

Identifier: 218532049

GI number: 218532049

Start: 4369494

End: 4370918

Strand: Reverse

Name: cydA [H]

Synonym: Mchl_4143

Alternate gene names: 218532049

Gene position: 4370918-4369494 (Counterclockwise)

Preceding gene: 218532050

Following gene: 218532048

Centisome position: 75.65

GC content: 67.65

Gene sequence:

>1425_bases
ATGCCGGACAACTACCTCCCCAGCGCACTCGATCTCGCTCGGAGCCAATTCGCCTTTACGGTCGTCTGGCATTTCCTGTT
TCCGGCTTTCACCATCGGGCTGGCCAGCTTCCTTGCGGTGCTCGAAGCCTTCTGGCTGGCCACCGGACGCGCCGTCTATC
TCGATTCCTACCGGTACTGGCTCAAGATCTTCGCCATCGCGTTCGCCATGGGCGTCGTCTCGGGGCTCGTCATGAGCTAC
CAGTTCGGCACCAACTGGTCGGTCTTTTCCGACAAGACGGCTCCGATTCTCGGTCCCCTTCTGGGCTACGAAGTCCTGAC
GGCCTTCTTCCTGGAGGCGGGTTTTCTCGGAGTGATGTTGTTCGGCCTGGAGCGCGTGGGCCCGCGCCTCCACTTCCTCG
CCACCTGCCTCGTCGCGGTGGGCACGCTGACCTCGGCCTTCTGGATCCTGTCGGCCAATTCCTGGATGCAGACGCCGGCG
GGCTACGTGCTCGACGCCAACGGCCATTTCGCGCCCCAGGATTGGTGGGCCGCGGTCTTCAACCCGTCCTTCCCCTTCCG
TTTCGCCCACACCGTCACCGCCGCCTACCTCACCACCGCGATGATCGTCGGCGCGGTGGGGGCGTGGCATCTCCTGCGCG
ACCGATCGAACCCGCGCGCGCGCCTGATGTTCTCGATGGCGATGTGGATGGCGGCCATCGTCGCCCCCGTCCAACTCGTC
CTGGGCGATCTGCATGGGACCAACACCTACCACTACCAGCCCGCCAAGGTCGCGGCGATGGAAGGCCATTTCGACAGTGA
GCGGCGCGCGCCCTCGATCCTGTTCGGCTGGCCGGACGCGCAGGCCGAGACGACGCGTTGGGCGATCGGCATACCGGGGC
TCGCGAGCCTGTATCTCGCCCACGACCTCAACGCCGAGGTGCGCGGGCTGAAGGCCCTGCCCCGCGACACCTGGCCGACC
AACCTGCCCCTGGTGTTCTGGGCCTTCCGGGTCATGGTCGGGCTCGGCTTCCTGATGATCGCCTTGGGCGTGGCCTCCCT
CTATCTGCGCTGGAAGGAACGGCTCTACACGTCGCGATGGCTGCACCGCTGCGCGGTCGCGATGGGCCCGTCCGGCCTCG
TCGCCGTCACGGCGGGCTGGGTGGTGACGGAATCCGGGCGCCAGCCCTTCACCGTGTACGGGCTGCTGCGCACCGCCGAC
AGCGTCTCACCCATCGCCGCCCCCGCGGTTGCGACCTCGCTGGCCGCGTTCGCCGTGGTCTACTTCGTCGTGTTCGGGGC
CGGCATCTGGTTCCTTCTGCACCTCTTCAATCAGCCCCCGCGACCGCACGAGGCGGGTCTGCCCACCGGTCAGCCGGTGC
GCACCGCCGGCATTACCCCAGCCCCGGCGCTCGCCGCCGGTCCGAATGCCCAGCCCGCTGAGTGA

Upstream 100 bases:

>100_bases
CCCTGCTGGGGCGTACTTTACGGGTGCCTCCAATAAAGGAGGTGTCGAGGATGTGCGCTGAGGGAGTCGTACTTCACTTC
CGCCGATCGAGTTTCAAAAG

Downstream 100 bases:

>100_bases
AGGAAGCGGTTTCGATGTCTCTCGACCTCACGCTGATCTGGGCCGTCCTGATCGCCACCGCCGTGTTCCTCTACGTGGCG
ATGGACGGGTTCGATCTCGG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MPDNYLPSALDLARSQFAFTVVWHFLFPAFTIGLASFLAVLEAFWLATGRAVYLDSYRYWLKIFAIAFAMGVVSGLVMSY
QFGTNWSVFSDKTAPILGPLLGYEVLTAFFLEAGFLGVMLFGLERVGPRLHFLATCLVAVGTLTSAFWILSANSWMQTPA
GYVLDANGHFAPQDWWAAVFNPSFPFRFAHTVTAAYLTTAMIVGAVGAWHLLRDRSNPRARLMFSMAMWMAAIVAPVQLV
LGDLHGTNTYHYQPAKVAAMEGHFDSERRAPSILFGWPDAQAETTRWAIGIPGLASLYLAHDLNAEVRGLKALPRDTWPT
NLPLVFWAFRVMVGLGFLMIALGVASLYLRWKERLYTSRWLHRCAVAMGPSGLVAVTAGWVVTESGRQPFTVYGLLRTAD
SVSPIAAPAVATSLAAFAVVYFVVFGAGIWFLLHLFNQPPRPHEAGLPTGQPVRTAGITPAPALAAGPNAQPAE

Sequences:

>Translated_474_residues
MPDNYLPSALDLARSQFAFTVVWHFLFPAFTIGLASFLAVLEAFWLATGRAVYLDSYRYWLKIFAIAFAMGVVSGLVMSY
QFGTNWSVFSDKTAPILGPLLGYEVLTAFFLEAGFLGVMLFGLERVGPRLHFLATCLVAVGTLTSAFWILSANSWMQTPA
GYVLDANGHFAPQDWWAAVFNPSFPFRFAHTVTAAYLTTAMIVGAVGAWHLLRDRSNPRARLMFSMAMWMAAIVAPVQLV
LGDLHGTNTYHYQPAKVAAMEGHFDSERRAPSILFGWPDAQAETTRWAIGIPGLASLYLAHDLNAEVRGLKALPRDTWPT
NLPLVFWAFRVMVGLGFLMIALGVASLYLRWKERLYTSRWLHRCAVAMGPSGLVAVTAGWVVTESGRQPFTVYGLLRTAD
SVSPIAAPAVATSLAAFAVVYFVVFGAGIWFLLHLFNQPPRPHEAGLPTGQPVRTAGITPAPALAAGPNAQPAE
>Mature_473_residues
PDNYLPSALDLARSQFAFTVVWHFLFPAFTIGLASFLAVLEAFWLATGRAVYLDSYRYWLKIFAIAFAMGVVSGLVMSYQ
FGTNWSVFSDKTAPILGPLLGYEVLTAFFLEAGFLGVMLFGLERVGPRLHFLATCLVAVGTLTSAFWILSANSWMQTPAG
YVLDANGHFAPQDWWAAVFNPSFPFRFAHTVTAAYLTTAMIVGAVGAWHLLRDRSNPRARLMFSMAMWMAAIVAPVQLVL
GDLHGTNTYHYQPAKVAAMEGHFDSERRAPSILFGWPDAQAETTRWAIGIPGLASLYLAHDLNAEVRGLKALPRDTWPTN
LPLVFWAFRVMVGLGFLMIALGVASLYLRWKERLYTSRWLHRCAVAMGPSGLVAVTAGWVVTESGRQPFTVYGLLRTADS
VSPIAAPAVATSLAAFAVVYFVVFGAGIWFLLHLFNQPPRPHEAGLPTGQPVRTAGITPAPALAAGPNAQPAE

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=510, Percent_Identity=32.7450980392157, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI87081779, Length=523, Percent_Identity=32.5047801147228, Blast_Score=239, Evalue=4e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51826; Mature: 51695

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PDNYLPSALDLARSQFAFTVVWHFLFPAFTIGLASFLAVLEAFWLATGRAVYLDSYRYW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHH
LKIFAIAFAMGVVSGLVMSYQFGTNWSVFSDKTAPILGPLLGYEVLTAFFLEAGFLGVML
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FGLERVGPRLHFLATCLVAVGTLTSAFWILSANSWMQTPAGYVLDANGHFAPQDWWAAVF
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHEECCCHHCCCCCEEEECCCCCCCHHHHHHHC
NPSFPFRFAHTVTAAYLTTAMIVGAVGAWHLLRDRSNPRARLMFSMAMWMAAIVAPVQLV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LGDLHGTNTYHYQPAKVAAMEGHFDSERRAPSILFGWPDAQAETTRWAIGIPGLASLYLA
HHHCCCCCCEEECCHHEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCHHHHHHH
HDLNAEVRGLKALPRDTWPTNLPLVFWAFRVMVGLGFLMIALGVASLYLRWKERLYTSRW
HCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHRCAVAMGPSGLVAVTAGWVVTESGRQPFTVYGLLRTADSVSPIAAPAVATSLAAFAVV
HHHHHHHCCCCCEEEEEECEEEECCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHH
YFVVFGAGIWFLLHLFNQPPRPHEAGLPTGQPVRTAGITPAPALAAGPNAQPAE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]