Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 218532048

GI number: 218532048

Start: 4368469

End: 4369479

Strand: Reverse

Name: cydB [H]

Synonym: Mchl_4142

Alternate gene names: 218532048

Gene position: 4369479-4368469 (Counterclockwise)

Preceding gene: 218532049

Following gene: 218532047

Centisome position: 75.62

GC content: 67.16

Gene sequence:

>1011_bases
ATGTCTCTCGACCTCACGCTGATCTGGGCCGTCCTGATCGCCACCGCCGTGTTCCTCTACGTGGCGATGGACGGGTTCGA
TCTCGGCATCGGCATCCTGTTCCCGGCCATATCCGCTAAGGCCGATCGGGACGTGATGGTGAACTCCGTCGCCCCCGTGT
GGGACGGCAACGAGACCTGGCTGATCCTCGGCGGCGGCGGGCTCTTCGCGGTCTTCCCGCTGGCCTACGTGACGATCCTG
CCGGCGCTCTACATGCCGCTGATCCTGATGCTGCTCGCCCTCGTCTTCCGCGGTGTCGCCTTCGAAATGCGTTTCCGCAT
GGTCACGGCGCGGGGTCAGCTCTGGTGGGACCGGGCCTTCTCCTGGGGCAGCTACGTCGCGGCCTTCTGCCAGGGCATCG
CGCTCGGCGCCCTCGTCCAGGGCATCCGCGTCGAGGGGCGGGCCTATGCCGGCGGCTGGTGGGACTGGCTCACCCCCTTC
TCCCTGCTGACCGGCGTGGCGCTGGTGGTGGGCTACGCGCTCCTGGGCGCATGCTGGCTCATCTGGAAGACGGGGGGCGA
ATTGCAGATCCGCGCTTACCGCCTCGCCCGCCCTCTGGGCCTGGCGACCTTGGTCCTGATCGCGATCATCTCGCTCACGA
TGCTCGTCCTCAGCGCCCCCTTCCGCGAGCGCTGGCTCTCCTTCCCCGGCATTCTCGTCGGGGCGCCGGTGCCCGTGCTC
GTCGGGCTGCTGGCTTTGCGCTTCCAGCGTTCGCTGGAGCGGCGGGAGGAGCTCATGCCCTTCCTCTGCGCGCTCGGCTT
CTTTCTGCTCTCCTATATCGGGCTCGCCATCAGCTTTTGGCCGATGATCGTGCCCCCGGACATCTCGATCTGGGCTGCGG
CCACGCATCCGAGCAGCCAAGCCTTTCTTCTCGCCGGTGCGGTGGTGCTGGTCCCGATGGTGCTCGGCTACACGGCCTAC
GTCTACTGGCTGTTTCGCGGCAAGGTCACACCGGAATCCGCGTATCACTGA

Upstream 100 bases:

>100_bases
TGCCCACCGGTCAGCCGGTGCGCACCGCCGGCATTACCCCAGCCCCGGCGCTCGCCGCCGGTCCGAATGCCCAGCCCGCT
GAGTGAAGGAAGCGGTTTCG

Downstream 100 bases:

>100_bases
TGGGTCGTCCTCAGCCGACGGCGGACCCTGCCTTCAGGCCCGACGCCGCACGGGTTCGCAGCGAGACGATCACCGGCAAG
CTCCGTCGGATCGGATGATT

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSLDLTLIWAVLIATAVFLYVAMDGFDLGIGILFPAISAKADRDVMVNSVAPVWDGNETWLILGGGGLFAVFPLAYVTIL
PALYMPLILMLLALVFRGVAFEMRFRMVTARGQLWWDRAFSWGSYVAAFCQGIALGALVQGIRVEGRAYAGGWWDWLTPF
SLLTGVALVVGYALLGACWLIWKTGGELQIRAYRLARPLGLATLVLIAIISLTMLVLSAPFRERWLSFPGILVGAPVPVL
VGLLALRFQRSLERREELMPFLCALGFFLLSYIGLAISFWPMIVPPDISIWAAATHPSSQAFLLAGAVVLVPMVLGYTAY
VYWLFRGKVTPESAYH

Sequences:

>Translated_336_residues
MSLDLTLIWAVLIATAVFLYVAMDGFDLGIGILFPAISAKADRDVMVNSVAPVWDGNETWLILGGGGLFAVFPLAYVTIL
PALYMPLILMLLALVFRGVAFEMRFRMVTARGQLWWDRAFSWGSYVAAFCQGIALGALVQGIRVEGRAYAGGWWDWLTPF
SLLTGVALVVGYALLGACWLIWKTGGELQIRAYRLARPLGLATLVLIAIISLTMLVLSAPFRERWLSFPGILVGAPVPVL
VGLLALRFQRSLERREELMPFLCALGFFLLSYIGLAISFWPMIVPPDISIWAAATHPSSQAFLLAGAVVLVPMVLGYTAY
VYWLFRGKVTPESAYH
>Mature_335_residues
SLDLTLIWAVLIATAVFLYVAMDGFDLGIGILFPAISAKADRDVMVNSVAPVWDGNETWLILGGGGLFAVFPLAYVTILP
ALYMPLILMLLALVFRGVAFEMRFRMVTARGQLWWDRAFSWGSYVAAFCQGIALGALVQGIRVEGRAYAGGWWDWLTPFS
LLTGVALVVGYALLGACWLIWKTGGELQIRAYRLARPLGLATLVLIAIISLTMLVLSAPFRERWLSFPGILVGAPVPVLV
GLLALRFQRSLERREELMPFLCALGFFLLSYIGLAISFWPMIVPPDISIWAAATHPSSQAFLLAGAVVLVPMVLGYTAYV
YWLFRGKVTPESAYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=364, Percent_Identity=29.9450549450549, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787213, Length=376, Percent_Identity=29.2553191489362, Blast_Score=129, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36943; Mature: 36811

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDLTLIWAVLIATAVFLYVAMDGFDLGIGILFPAISAKADRDVMVNSVAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEE
LILGGGGLFAVFPLAYVTILPALYMPLILMLLALVFRGVAFEMRFRMVTARGQLWWDRAF
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC
SWGSYVAAFCQGIALGALVQGIRVEGRAYAGGWWDWLTPFSLLTGVALVVGYALLGACWL
CHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IWKTGGELQIRAYRLARPLGLATLVLIAIISLTMLVLSAPFRERWLSFPGILVGAPVPVL
HHCCCCCEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEECCCHHHH
VGLLALRFQRSLERREELMPFLCALGFFLLSYIGLAISFWPMIVPPDISIWAAATHPSSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCEEEEECCCCCC
AFLLAGAVVLVPMVLGYTAYVYWLFRGKVTPESAYH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SLDLTLIWAVLIATAVFLYVAMDGFDLGIGILFPAISAKADRDVMVNSVAPVWDGNETW
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEE
LILGGGGLFAVFPLAYVTILPALYMPLILMLLALVFRGVAFEMRFRMVTARGQLWWDRAF
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC
SWGSYVAAFCQGIALGALVQGIRVEGRAYAGGWWDWLTPFSLLTGVALVVGYALLGACWL
CHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IWKTGGELQIRAYRLARPLGLATLVLIAIISLTMLVLSAPFRERWLSFPGILVGAPVPVL
HHCCCCCEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEECCCHHHH
VGLLALRFQRSLERREELMPFLCALGFFLLSYIGLAISFWPMIVPPDISIWAAATHPSSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCEEEEECCCCCC
AFLLAGAVVLVPMVLGYTAYVYWLFRGKVTPESAYH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]