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The map label for this gene is yddU [C]

Identifier: 218531610

GI number: 218531610

Start: 3874580

End: 3876583

Strand: Reverse

Name: yddU [C]

Synonym: Mchl_3679

Alternate gene names: 218531610

Gene position: 3876583-3874580 (Counterclockwise)

Preceding gene: 218531612

Following gene: 218531609

Centisome position: 67.09

GC content: 58.78

Gene sequence:

>2004_bases
ATGAACAGCGATACGCTCGATTTACTCGATCAGGAGCTCGGCAAGCGTTGGTTTCAACGCCGTTCGCCGATTCTGAATGC
CGCTTTCAGGGCGCAATACGCACAGGCGATGCGCGAAGAGATGGGTCGCGCGTGTCAGTTGGTGGGCCTGCTCTACGTCG
CGTTCGGCGTGATGGATGCGCTCCTCATCCGCGACATGCTCCCCTACCTCATCGCGCTGCGTCTCGTGCTCGGCGTGGGC
TACGTCACTTCGATCATGCTGCAGGTCCGTCGCGGCGCCGATACGCAGACCCTCGAACTTCAGTGCTCACTCGGCATCTA
TGTCGGCTTCGCAGCCTGGCTCTATCTTGCGACCCAGAGCTCCGATGAAACAGCGATCCTCTACTATGCCGGATACGGCT
TGATCTTCATGCTGGTCGCAAATCTGTTCTTCAACCTCAGTTTCAGGTTCGCTCTGCTCTCGTCAGGCCTGATCACCGCG
ACATTCCTGTTCTGGGCCCTCCGTTCGAACGGGAATTTATCCTACATCATCTGCTTTAGTTCCTTATATATACTGAGCTT
TCTGCTCACGGCGTTCCTCAATCTCAAGTACAATCGAGAGCGGTACCGCGTGCATTTGAACGCGTGCCGGGCCGAGTTGC
AGCAGCGCGAGGTCGTTCAACGCGGCGAGGAGCTGTTCCGGCTGTCCACGACCGACGTCCTGACGGGCTTGGCCAACCGC
CGTGCGATCGACAGCGTCCTGCAGGAACTCTGGCTCGCCAATGTCAACTCGGGGCAGGCGTTCGGCGTGATCCTGATCGA
TGTCGATTTCTTCAAGCTCTACAACGATCGCTACGGGCATCAACGGGGCGATAGCTGCCTCGCCGCTTTGGGTGAGGCGA
TGCGCGGCGCTGCCGATAAGAGGCGGTATGCGATCGGGCGCTTCGGAGGCGAGGAGTTCGCGGCTCTCTTCCAGGCCGAT
TCAGCCGAACAGGTTCTCGAATTCGCTGAGGAGGTTCGTCAAGCCGTCGAGGCGCTGCAGATCCCCCATGCAGCACGGCG
TGATCCGCTCTCCCATGTCACGGTGAGCATCGGAGCGGCGTTCTCCGCGGATGTCGCGGACGATAAGCCGGAGCGTGCGA
TTTCCGCAGCTGACGACGCTCTCTATGTCGCGAAGGAAGAAGGCCGCAATCGCGCGCGAATCTTCAATGCGAGGATGCGC
CATAGCACGGAGAGCGATGATCTGAATGCGGAGATGCTCCGAGCGGCTGTCACGGACGGGCGCATATCCGCGGTCTTTCA
GCCCATCGTCGATGTCTCAAGCGGACGCATCTGGGCCGCGGAGACGCTGATGCGGCTCAAGGACACGCAAGGCCGCGCGA
TCTCCCCGGAAACGTTCATCCCTGTCGCCGAGCGCACGGGTGCTATTCTTGAGATGGGCGCATGGATCCTGCGTCAGGCT
TGCGACCTTCTCGCGAGCGAGCCCGAACTACCCATCGTCAGCGTGAACATCTCCGCACGACAGATTTCCGAACCGAACTT
CATCAGTTCCGTCGAAGCCATCGTCCGAGCCGCCGGCATCGCTCCGTCACGCCTTGCTCTGGAGATCACCGAGAGCGGGG
AGATCAGTGGCAACCCAGAAGTCGCTCAGTTGATGGACCGGCTCAACACGATCGGGATCCGCGTTTGGCTGGATGATTTC
GGGACGGGTTTTGCGGGCCTTACCTGCCTGAGTGAACTGCGGTTTGATATGGTGAAGATCGACCGTTTCTTTGTGCAGAG
CTGTGATACCCCGCGGGGGGCAAAGCTGCTTAAAAACATCATCGACTTGGTCAACAATTGCGCTCAGAGGCCGATCGTCG
AAGGCGTTGAAGAGGCGTGGCAGATCGACCTTGTGTCGTCTTTCGGCGCGGATCTCTTTCAAGGCTATCACCTCGGAAGG
CCAATGCCCCGAAGCGAACTTAAGCTGATGCTTTCTGAGTATTTGCCTTCAAATGAGAATTTAGAAATGCTGCACAGTAG
TTGA

Upstream 100 bases:

>100_bases
GGATTTGATACCCAGGCAGTGCGATCCACAGCGATGGAGCCCGCATTAAGGGTTTTGGGACACCGCGTTGGTATCGATGC
TGGATGAGGCTCGGTCCACG

Downstream 100 bases:

>100_bases
GTGTATTAGCTTCCAGCTGACGTGTTTGATTTGTGATCGCATCGCACTTCAGCCTAGGCATCTGTGGATCCGCGCTCATC
ACGACGATTGGAGCCTCGGA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 667; Mature: 667

Protein sequence:

>667_residues
MNSDTLDLLDQELGKRWFQRRSPILNAAFRAQYAQAMREEMGRACQLVGLLYVAFGVMDALLIRDMLPYLIALRLVLGVG
YVTSIMLQVRRGADTQTLELQCSLGIYVGFAAWLYLATQSSDETAILYYAGYGLIFMLVANLFFNLSFRFALLSSGLITA
TFLFWALRSNGNLSYIICFSSLYILSFLLTAFLNLKYNRERYRVHLNACRAELQQREVVQRGEELFRLSTTDVLTGLANR
RAIDSVLQELWLANVNSGQAFGVILIDVDFFKLYNDRYGHQRGDSCLAALGEAMRGAADKRRYAIGRFGGEEFAALFQAD
SAEQVLEFAEEVRQAVEALQIPHAARRDPLSHVTVSIGAAFSADVADDKPERAISAADDALYVAKEEGRNRARIFNARMR
HSTESDDLNAEMLRAAVTDGRISAVFQPIVDVSSGRIWAAETLMRLKDTQGRAISPETFIPVAERTGAILEMGAWILRQA
CDLLASEPELPIVSVNISARQISEPNFISSVEAIVRAAGIAPSRLALEITESGEISGNPEVAQLMDRLNTIGIRVWLDDF
GTGFAGLTCLSELRFDMVKIDRFFVQSCDTPRGAKLLKNIIDLVNNCAQRPIVEGVEEAWQIDLVSSFGADLFQGYHLGR
PMPRSELKLMLSEYLPSNENLEMLHSS

Sequences:

>Translated_667_residues
MNSDTLDLLDQELGKRWFQRRSPILNAAFRAQYAQAMREEMGRACQLVGLLYVAFGVMDALLIRDMLPYLIALRLVLGVG
YVTSIMLQVRRGADTQTLELQCSLGIYVGFAAWLYLATQSSDETAILYYAGYGLIFMLVANLFFNLSFRFALLSSGLITA
TFLFWALRSNGNLSYIICFSSLYILSFLLTAFLNLKYNRERYRVHLNACRAELQQREVVQRGEELFRLSTTDVLTGLANR
RAIDSVLQELWLANVNSGQAFGVILIDVDFFKLYNDRYGHQRGDSCLAALGEAMRGAADKRRYAIGRFGGEEFAALFQAD
SAEQVLEFAEEVRQAVEALQIPHAARRDPLSHVTVSIGAAFSADVADDKPERAISAADDALYVAKEEGRNRARIFNARMR
HSTESDDLNAEMLRAAVTDGRISAVFQPIVDVSSGRIWAAETLMRLKDTQGRAISPETFIPVAERTGAILEMGAWILRQA
CDLLASEPELPIVSVNISARQISEPNFISSVEAIVRAAGIAPSRLALEITESGEISGNPEVAQLMDRLNTIGIRVWLDDF
GTGFAGLTCLSELRFDMVKIDRFFVQSCDTPRGAKLLKNIIDLVNNCAQRPIVEGVEEAWQIDLVSSFGADLFQGYHLGR
PMPRSELKLMLSEYLPSNENLEMLHSS
>Mature_667_residues
MNSDTLDLLDQELGKRWFQRRSPILNAAFRAQYAQAMREEMGRACQLVGLLYVAFGVMDALLIRDMLPYLIALRLVLGVG
YVTSIMLQVRRGADTQTLELQCSLGIYVGFAAWLYLATQSSDETAILYYAGYGLIFMLVANLFFNLSFRFALLSSGLITA
TFLFWALRSNGNLSYIICFSSLYILSFLLTAFLNLKYNRERYRVHLNACRAELQQREVVQRGEELFRLSTTDVLTGLANR
RAIDSVLQELWLANVNSGQAFGVILIDVDFFKLYNDRYGHQRGDSCLAALGEAMRGAADKRRYAIGRFGGEEFAALFQAD
SAEQVLEFAEEVRQAVEALQIPHAARRDPLSHVTVSIGAAFSADVADDKPERAISAADDALYVAKEEGRNRARIFNARMR
HSTESDDLNAEMLRAAVTDGRISAVFQPIVDVSSGRIWAAETLMRLKDTQGRAISPETFIPVAERTGAILEMGAWILRQA
CDLLASEPELPIVSVNISARQISEPNFISSVEAIVRAAGIAPSRLALEITESGEISGNPEVAQLMDRLNTIGIRVWLDDF
GTGFAGLTCLSELRFDMVKIDRFFVQSCDTPRGAKLLKNIIDLVNNCAQRPIVEGVEEAWQIDLVSSFGADLFQGYHLGR
PMPRSELKLMLSEYLPSNENLEMLHSS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=449, Percent_Identity=28.0623608017817, Blast_Score=167, Evalue=3e-42,
Organism=Escherichia coli, GI1787541, Length=443, Percent_Identity=28.2167042889391, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI226510982, Length=456, Percent_Identity=28.7280701754386, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI87081845, Length=249, Percent_Identity=31.7269076305221, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=27.7777777777778, Blast_Score=118, Evalue=2e-27,
Organism=Escherichia coli, GI1786507, Length=274, Percent_Identity=29.9270072992701, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=28.0334728033473, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1787055, Length=242, Percent_Identity=31.8181818181818, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1788502, Length=272, Percent_Identity=26.4705882352941, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=37.2781065088757, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=34.9112426035503, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788849, Length=539, Percent_Identity=21.1502782931354, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082096, Length=248, Percent_Identity=28.6290322580645, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=31.8181818181818, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87081974, Length=222, Percent_Identity=28.8288288288288, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87082007, Length=160, Percent_Identity=33.75, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=32.3170731707317, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=176, Percent_Identity=31.8181818181818, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1788085, Length=169, Percent_Identity=31.9526627218935, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=25.2032520325203, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI87082280, Length=227, Percent_Identity=29.0748898678414, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787410, Length=215, Percent_Identity=28.3720930232558, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=161, Percent_Identity=32.2981366459627, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788956, Length=191, Percent_Identity=28.2722513089005, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=30.4597701149425, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 74285; Mature: 74285

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSDTLDLLDQELGKRWFQRRSPILNAAFRAQYAQAMREEMGRACQLVGLLYVAFGVMDA
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIRDMLPYLIALRLVLGVGYVTSIMLQVRRGADTQTLELQCSLGIYVGFAAWLYLATQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHCCC
SDETAILYYAGYGLIFMLVANLFFNLSFRFALLSSGLITATFLFWALRSNGNLSYIICFS
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHH
SLYILSFLLTAFLNLKYNRERYRVHLNACRAELQQREVVQRGEELFRLSTTDVLTGLANR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAIDSVLQELWLANVNSGQAFGVILIDVDFFKLYNDRYGHQRGDSCLAALGEAMRGAADK
HHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHH
RRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQAVEALQIPHAARRDPLSHVTVSIGAA
HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHEEEEECCC
FSADVADDKPERAISAADDALYVAKEEGRNRARIFNARMRHSTESDDLNAEMLRAAVTDG
EECCCCCCCHHHHHHHCCCCEEEEHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
RISAVFQPIVDVSSGRIWAAETLMRLKDTQGRAISPETFIPVAERTGAILEMGAWILRQA
HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHH
CDLLASEPELPIVSVNISARQISEPNFISSVEAIVRAAGIAPSRLALEITESGEISGNPE
HHHHCCCCCCCEEEEECCHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCH
VAQLMDRLNTIGIRVWLDDFGTGFAGLTCLSELRFDMVKIDRFFVQSCDTPRGAKLLKNI
HHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
IDLVNNCAQRPIVEGVEEAWQIDLVSSFGADLFQGYHLGRPMPRSELKLMLSEYLPSNEN
HHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCHHCCCCCCHHHHHHHHHHHCCCCCC
LEMLHSS
CHHCCCC
>Mature Secondary Structure
MNSDTLDLLDQELGKRWFQRRSPILNAAFRAQYAQAMREEMGRACQLVGLLYVAFGVMDA
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIRDMLPYLIALRLVLGVGYVTSIMLQVRRGADTQTLELQCSLGIYVGFAAWLYLATQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHCCC
SDETAILYYAGYGLIFMLVANLFFNLSFRFALLSSGLITATFLFWALRSNGNLSYIICFS
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHH
SLYILSFLLTAFLNLKYNRERYRVHLNACRAELQQREVVQRGEELFRLSTTDVLTGLANR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAIDSVLQELWLANVNSGQAFGVILIDVDFFKLYNDRYGHQRGDSCLAALGEAMRGAADK
HHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHH
RRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQAVEALQIPHAARRDPLSHVTVSIGAA
HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHEEEEECCC
FSADVADDKPERAISAADDALYVAKEEGRNRARIFNARMRHSTESDDLNAEMLRAAVTDG
EECCCCCCCHHHHHHHCCCCEEEEHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
RISAVFQPIVDVSSGRIWAAETLMRLKDTQGRAISPETFIPVAERTGAILEMGAWILRQA
HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHH
CDLLASEPELPIVSVNISARQISEPNFISSVEAIVRAAGIAPSRLALEITESGEISGNPE
HHHHCCCCCCCEEEEECCHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCH
VAQLMDRLNTIGIRVWLDDFGTGFAGLTCLSELRFDMVKIDRFFVQSCDTPRGAKLLKNI
HHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
IDLVNNCAQRPIVEGVEEAWQIDLVSSFGADLFQGYHLGRPMPRSELKLMLSEYLPSNEN
HHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHCHHCCCCCCHHHHHHHHHHHCCCCCC
LEMLHSS
CHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]