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The map label for this gene is deoC [H]

Identifier: 218531141

GI number: 218531141

Start: 3372340

End: 3373113

Strand: Reverse

Name: deoC [H]

Synonym: Mchl_3191

Alternate gene names: 218531141

Gene position: 3373113-3372340 (Counterclockwise)

Preceding gene: 218531142

Following gene: 218531140

Centisome position: 58.38

GC content: 71.96

Gene sequence:

>774_bases
ATGACCGCTTCAGCCCCCCTCCCCCCGCAGGATGCGGTCCGAGTCAGGGCGGATCTGGCGCGACGCGCCCTGCCGCTGCT
CGATCTCACCGACCTGAGCGACGCCTGCACCGCCGCCGCCGTCGAAGACCTGTGCGAGAAGGCCCGCGCGAGCGGGGTCG
CGGCCGTCTGCGTCTGGCCGCGTTTCGTCGCCGATTCGGTTCGTGGGCTTCGCGGAAGTGGCGTTCGGGTCGCCACCGTC
GTCAATTTCCCGGAAGGCGGCGAGGCGGTGGAGCGCACGGTCGCGGAGACGCAGGCCACGCTCGCGGACGGCGCTGACGA
GATCGACCTCGTCCTGCCCTATCGCGCCTTGATGCGGGGCGACGCGGAGAGCGCCCGCGCCATGGTGGAGGCCGTGCGCG
CGGCCTGCGCGGGCCGGCTGCTCAAGGTGATCCTGGAGACCGGCGAACTCGAAGACCCGGATCTGATCGCGCAGGCGAGC
CGCCTGTCGCTCGAGGCCGGTGCCGATTTCATCAAGACCTCCACCGGTAAGACCACGGTCTCGGCGACGCTGCCGGCGGC
CGAGATCATGCTGGAGGCGATCCGCGCACACGGCGGCGACCGGCCTGTGGGGCTCAAGGTCTCGGGCGGCCTGCGCCGGG
TCGAGGACGCCGCCGCGTATCTCGCGCTCGCCGACCGGATGATGGGGCCGGATTGGGTGAGCCCGAACACCTTCCGCATC
GGAGCCAGCGCGCTCCACGCCGAACTCGTGCGCGCCGGTGAGGCTGCCCGATGA

Upstream 100 bases:

>100_bases
CCATGCCGAAACCAAGGCGGTCGCCGCCCGCGCCGGGGCGGATCTCGCCCGGCTCGTCACCGGCTTCGTCGGCCGGCTGC
CCGAAGCGTAGGAAACACGG

Downstream 100 bases:

>100_bases
GACTTCCCCAGGAGATCATCCGCGACAAGCGCGACGGACACGCGCTGTCGGAGGCCGACATCGCCGGCTTCATCGAGGGG
CTGACGCAGGATCAGGTCAC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MTASAPLPPQDAVRVRADLARRALPLLDLTDLSDACTAAAVEDLCEKARASGVAAVCVWPRFVADSVRGLRGSGVRVATV
VNFPEGGEAVERTVAETQATLADGADEIDLVLPYRALMRGDAESARAMVEAVRAACAGRLLKVILETGELEDPDLIAQAS
RLSLEAGADFIKTSTGKTTVSATLPAAEIMLEAIRAHGGDRPVGLKVSGGLRRVEDAAAYLALADRMMGPDWVSPNTFRI
GASALHAELVRAGEAAR

Sequences:

>Translated_257_residues
MTASAPLPPQDAVRVRADLARRALPLLDLTDLSDACTAAAVEDLCEKARASGVAAVCVWPRFVADSVRGLRGSGVRVATV
VNFPEGGEAVERTVAETQATLADGADEIDLVLPYRALMRGDAESARAMVEAVRAACAGRLLKVILETGELEDPDLIAQAS
RLSLEAGADFIKTSTGKTTVSATLPAAEIMLEAIRAHGGDRPVGLKVSGGLRRVEDAAAYLALADRMMGPDWVSPNTFRI
GASALHAELVRAGEAAR
>Mature_256_residues
TASAPLPPQDAVRVRADLARRALPLLDLTDLSDACTAAAVEDLCEKARASGVAAVCVWPRFVADSVRGLRGSGVRVATVV
NFPEGGEAVERTVAETQATLADGADEIDLVLPYRALMRGDAESARAMVEAVRAACAGRLLKVILETGELEDPDLIAQASR
LSLEAGADFIKTSTGKTTVSATLPAAEIMLEAIRAHGGDRPVGLKVSGGLRRVEDAAAYLALADRMMGPDWVSPNTFRIG
ASALHAELVRAGEAAR

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=252, Percent_Identity=36.5079365079365, Blast_Score=151, Evalue=6e-37,
Organism=Escherichia coli, GI1790841, Length=227, Percent_Identity=48.4581497797357, Blast_Score=199, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17533015, Length=249, Percent_Identity=37.3493975903614, Blast_Score=141, Evalue=3e-34,
Organism=Drosophila melanogaster, GI19922098, Length=258, Percent_Identity=37.984496124031, Blast_Score=130, Evalue=9e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 26854; Mature: 26723

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASAPLPPQDAVRVRADLARRALPLLDLTDLSDACTAAAVEDLCEKARASGVAAVCVWP
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEHHH
RFVADSVRGLRGSGVRVATVVNFPEGGEAVERTVAETQATLADGADEIDLVLPYRALMRG
HHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCC
DAESARAMVEAVRAACAGRLLKVILETGELEDPDLIAQASRLSLEAGADFIKTSTGKTTV
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCEEE
SATLPAAEIMLEAIRAHGGDRPVGLKVSGGLRRVEDAAAYLALADRMMGPDWVSPNTFRI
EECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEH
GASALHAELVRAGEAAR
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TASAPLPPQDAVRVRADLARRALPLLDLTDLSDACTAAAVEDLCEKARASGVAAVCVWP
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEHHH
RFVADSVRGLRGSGVRVATVVNFPEGGEAVERTVAETQATLADGADEIDLVLPYRALMRG
HHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHCC
DAESARAMVEAVRAACAGRLLKVILETGELEDPDLIAQASRLSLEAGADFIKTSTGKTTV
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCEEE
SATLPAAEIMLEAIRAHGGDRPVGLKVSGGLRRVEDAAAYLALADRMMGPDWVSPNTFRI
EECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEH
GASALHAELVRAGEAAR
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA