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The map label for this gene is ybaO [C]

Identifier: 218530979

GI number: 218530979

Start: 3197498

End: 3197923

Strand: Reverse

Name: ybaO [C]

Synonym: Mchl_3029

Alternate gene names: 218530979

Gene position: 3197923-3197498 (Counterclockwise)

Preceding gene: 218530985

Following gene: 218530975

Centisome position: 55.35

GC content: 68.54

Gene sequence:

>426_bases
ATGCTCGACGCGACCGATCGTCAGCTCATCGCCCTGCTGCGCACCGAGGCGCGGATGCCGGTGGCCAAGCTCGCGGCGGC
GCTCGGCGTCACGCGGGCGACGGTGCGGGCCCGGCTCGACCGTCTGGTGACGTCTGGAATCATCACCGGCTTCACCGTCA
CAGTGCGAGACGTGGAGCCCGGAGGCGTGCGGGCGGTGACACTAATCGAGGTGGATGGGCGCCATGCCGAGAGCGTGATC
CGCCGCCTGTCCGGCCTGCCGGAGATCCGGGCGCTTCACACCACCAATGGCCGCTGGGATATCGTCGCCGAGATCGAGGT
GCCGACGCTCGGCGATTTCGACGCGCTGCTGCGCACGATTCGTCAGTTCGAGGGGATCGCCAATTCCGAGACCAGCATCC
TGCTCGCAGCCCGGAAGGGCGGATGA

Upstream 100 bases:

>100_bases
CATGGCTGAGACGAGCGGACAATCGACAGCCGGTGAAATGCGCGATCGGGACAGACAATCGACCGATCTGCTAAGCTCGG
CTGCTCGAAGTGGAAAGGTC

Downstream 100 bases:

>100_bases
GCCAGGGGACCTCGTGAGACGCCCGATCACGCATCGTTCTCGCCCTGGCGACGAGCGCGCGCCGGGAGTCTTGTGAGAGT
GGCTAAGCCGGCACGCCGTA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MLDATDRQLIALLRTEARMPVAKLAAALGVTRATVRARLDRLVTSGIITGFTVTVRDVEPGGVRAVTLIEVDGRHAESVI
RRLSGLPEIRALHTTNGRWDIVAEIEVPTLGDFDALLRTIRQFEGIANSETSILLAARKGG

Sequences:

>Translated_141_residues
MLDATDRQLIALLRTEARMPVAKLAAALGVTRATVRARLDRLVTSGIITGFTVTVRDVEPGGVRAVTLIEVDGRHAESVI
RRLSGLPEIRALHTTNGRWDIVAEIEVPTLGDFDALLRTIRQFEGIANSETSILLAARKGG
>Mature_141_residues
MLDATDRQLIALLRTEARMPVAKLAAALGVTRATVRARLDRLVTSGIITGFTVTVRDVEPGGVRAVTLIEVDGRHAESVI
RRLSGLPEIRALHTTNGRWDIVAEIEVPTLGDFDALLRTIRQFEGIANSETSILLAARKGG

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR013249
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 15251; Mature: 15251

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDATDRQLIALLRTEARMPVAKLAAALGVTRATVRARLDRLVTSGIITGFTVTVRDVEP
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
GGVRAVTLIEVDGRHAESVIRRLSGLPEIRALHTTNGRWDIVAEIEVPTLGDFDALLRTI
CCEEEEEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHH
RQFEGIANSETSILLAARKGG
HHHCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MLDATDRQLIALLRTEARMPVAKLAAALGVTRATVRARLDRLVTSGIITGFTVTVRDVEP
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
GGVRAVTLIEVDGRHAESVIRRLSGLPEIRALHTTNGRWDIVAEIEVPTLGDFDALLRTI
CCEEEEEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHH
RQFEGIANSETSILLAARKGG
HHHCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]