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The map label for this gene is ndoB [H]

Identifier: 218530985

GI number: 218530985

Start: 3202424

End: 3203572

Strand: Reverse

Name: ndoB [H]

Synonym: Mchl_3035

Alternate gene names: 218530985

Gene position: 3203572-3202424 (Counterclockwise)

Preceding gene: 218530987

Following gene: 218530979

Centisome position: 55.45

GC content: 59.88

Gene sequence:

>1149_bases
ATGCTGCCTTGCGCAAATTACTACCGTCCCGAGATCCTTGCCGACGAACTGGACACTCTGTTCGATCCACTCTGGCAATT
TGGAGCCCTAGCAGGAGAACTCGCCGCGGATCGCGATTTCGTCTGCGTCGATTACAAGAACACGGCGACCGTCCTGCAGA
ACTTCCGCGGCGAGATCCGGGCATTCGCCAATGTGTGCAGCCATCGGTTCAACCGCATCCAGCCGGGCGAGCGCGGCAAC
CGGCCGCTGATGTGTGCCTATCATGGCTGGAGCTTCGACAGCACCGGTTTCCCGCACGGCATGCCGCGCCGCGGCGGATT
CGCGCTCGATGATCGCGAGCGGTTATGTCTGACCGGTTACGAAGTTGAGACGTGCGGAATTTTCGTATTTTTTCGTAAGC
GGAGCGGCGGACCGTCTCTGCGCGAGTATCTGGGCGCATTCTATCCACTGCTTGAGCAGATCGGATCCTATTTCGGACCG
GAAATTGATGCTGGAACAATTTCACACGCGGCCAATTGGAAGCTGCTCGTCGAGAACGTTCTTGAATGCTACCATTGCTC
GGTCGTCCATCAGGACACGTTCGTGAAAACGCTCGGGATTGGCAGAGCAGGCATCGAGCAGGAACGGTTCGACGGACCGC
ATTCCAGTAGCCACTTCCCGCGCACCGCGACGGCCGGAGAGGCCCGGCGGCAGAAGGCGCTCGCCTATCTCGACACCCGC
GCCTTCACCCACGACTCGTTTTTCCACATTCACATCTTTCCCAACCTGTTCATCTCATCGACGCAGGGCCTGTCTTTTTA
TGTCGGCCACGCTTTGCCTCTGTCGGCGACGGAAACCGGACTGCGCTTTCGGCTATTCGAACCGAAGCTCGACCTGACCC
GTGCGCAGCGCGCGGCACAGGATCTGATCAACCAATCGGGCAAGGCGCTGGGTCGTGCGGTGATCGACGAGGACCGAGCG
ATCCTGGAAAATGTCCAGCGGGGCGTCGAATTGTCGGAGAAGCCCGGTGTGATCGGTCGCGACGAAATCCGGATCGCCGC
GTTCATGCGCGCCTACACGCACCTCATGGGTGGCGGCTCACTTGGCGGTATACCCTCCATCGACGACCATGTTGCTGCCG
GTGATCCAGCGCGAAGCATCGCTGAGTAG

Upstream 100 bases:

>100_bases
ACAAAACTCGCGACCACCGATCGTCTCCGTTCTGAGCACGGCAGCGCAGCGGGAGTTTTGCGAGAGACACTAAGAAGGCC
GGCTCGAGAACGAAACGCCC

Downstream 100 bases:

>100_bases
AAACATCGCAGCGTGGGCAATATCGTCGGGTCGGCCAAAGCCGAGCATGTGCAGCGCCTCGTAGTTCCGCACCATTTCGC
TGCCGACCGATTCCGTGAAA

Product: Rieske (2Fe-2S) domain protein

Products: NA

Alternate protein names: Naphthalene 1,2-dioxygenase ISP alpha [H]

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MLPCANYYRPEILADELDTLFDPLWQFGALAGELAADRDFVCVDYKNTATVLQNFRGEIRAFANVCSHRFNRIQPGERGN
RPLMCAYHGWSFDSTGFPHGMPRRGGFALDDRERLCLTGYEVETCGIFVFFRKRSGGPSLREYLGAFYPLLEQIGSYFGP
EIDAGTISHAANWKLLVENVLECYHCSVVHQDTFVKTLGIGRAGIEQERFDGPHSSSHFPRTATAGEARRQKALAYLDTR
AFTHDSFFHIHIFPNLFISSTQGLSFYVGHALPLSATETGLRFRLFEPKLDLTRAQRAAQDLINQSGKALGRAVIDEDRA
ILENVQRGVELSEKPGVIGRDEIRIAAFMRAYTHLMGGGSLGGIPSIDDHVAAGDPARSIAE

Sequences:

>Translated_382_residues
MLPCANYYRPEILADELDTLFDPLWQFGALAGELAADRDFVCVDYKNTATVLQNFRGEIRAFANVCSHRFNRIQPGERGN
RPLMCAYHGWSFDSTGFPHGMPRRGGFALDDRERLCLTGYEVETCGIFVFFRKRSGGPSLREYLGAFYPLLEQIGSYFGP
EIDAGTISHAANWKLLVENVLECYHCSVVHQDTFVKTLGIGRAGIEQERFDGPHSSSHFPRTATAGEARRQKALAYLDTR
AFTHDSFFHIHIFPNLFISSTQGLSFYVGHALPLSATETGLRFRLFEPKLDLTRAQRAAQDLINQSGKALGRAVIDEDRA
ILENVQRGVELSEKPGVIGRDEIRIAAFMRAYTHLMGGGSLGGIPSIDDHVAAGDPARSIAE
>Mature_382_residues
MLPCANYYRPEILADELDTLFDPLWQFGALAGELAADRDFVCVDYKNTATVLQNFRGEIRAFANVCSHRFNRIQPGERGN
RPLMCAYHGWSFDSTGFPHGMPRRGGFALDDRERLCLTGYEVETCGIFVFFRKRSGGPSLREYLGAFYPLLEQIGSYFGP
EIDAGTISHAANWKLLVENVLECYHCSVVHQDTFVKTLGIGRAGIEQERFDGPHSSSHFPRTATAGEARRQKALAYLDTR
AFTHDSFFHIHIFPNLFISSTQGLSFYVGHALPLSATETGLRFRLFEPKLDLTRAQRAAQDLINQSGKALGRAVIDEDRA
ILENVQRGVELSEKPGVIGRDEIRIAAFMRAYTHLMGGGSLGGIPSIDDHVAAGDPARSIAE

Specific function: Component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol [H]

COG id: COG4638

COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788103, Length=193, Percent_Identity=29.5336787564767, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941
- InterPro:   IPR015881
- InterPro:   IPR015879
- InterPro:   IPR001663 [H]

Pfam domain/function: PF00355 Rieske; PF00848 Ring_hydroxyl_A [H]

EC number: =1.14.12.12 [H]

Molecular weight: Translated: 42483; Mature: 42483

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPCANYYRPEILADELDTLFDPLWQFGALAGELAADRDFVCVDYKNTATVLQNFRGEIR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
AFANVCSHRFNRIQPGERGNRPLMCAYHGWSFDSTGFPHGMPRRGGFALDDRERLCLTGY
HHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
EVETCGIFVFFRKRSGGPSLREYLGAFYPLLEQIGSYFGPEIDAGTISHAANWKLLVENV
EEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
LECYHCSVVHQDTFVKTLGIGRAGIEQERFDGPHSSSHFPRTATAGEARRQKALAYLDTR
HHHHHHHHHCCHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AFTHDSFFHIHIFPNLFISSTQGLSFYVGHALPLSATETGLRFRLFEPKLDLTRAQRAAQ
HCCCCCEEEEEEECCCEEECCCCCEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
DLINQSGKALGRAVIDEDRAILENVQRGVELSEKPGVIGRDEIRIAAFMRAYTHLMGGGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
LGGIPSIDDHVAAGDPARSIAE
CCCCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MLPCANYYRPEILADELDTLFDPLWQFGALAGELAADRDFVCVDYKNTATVLQNFRGEIR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
AFANVCSHRFNRIQPGERGNRPLMCAYHGWSFDSTGFPHGMPRRGGFALDDRERLCLTGY
HHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
EVETCGIFVFFRKRSGGPSLREYLGAFYPLLEQIGSYFGPEIDAGTISHAANWKLLVENV
EEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
LECYHCSVVHQDTFVKTLGIGRAGIEQERFDGPHSSSHFPRTATAGEARRQKALAYLDTR
HHHHHHHHHCCHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AFTHDSFFHIHIFPNLFISSTQGLSFYVGHALPLSATETGLRFRLFEPKLDLTRAQRAAQ
HCCCCCEEEEEEECCCEEECCCCCEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
DLINQSGKALGRAVIDEDRAILENVQRGVELSEKPGVIGRDEIRIAAFMRAYTHLMGGGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
LGGIPSIDDHVAAGDPARSIAE
CCCCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3243438; 8973308; 8486285; 9634695 [H]