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The map label for this gene is ycbK [H]

Identifier: 218530928

GI number: 218530928

Start: 3140212

End: 3141702

Strand: Reverse

Name: ycbK [H]

Synonym: Mchl_2978

Alternate gene names: 218530928

Gene position: 3141702-3140212 (Counterclockwise)

Preceding gene: 218530929

Following gene: 218530924

Centisome position: 54.37

GC content: 71.7

Gene sequence:

>1491_bases
ATGCTGCGCACGATCCGGGACCGCCTGTCCTCGAACCGCACTTCGCCCTCCCCGCGCCTGAAGCGCCTCGCCTCCGCTGC
AGGCGCGATGGCCGCCCTGCTCGTCGCCGGCACGGTCGAGACCCAGGACGCCGTCGCCAACGGCGACACCCGCAGCCTCT
CCATGGTGCACGAGCACACGGGGGAGACGCTGAACGTCACCTTCAAGCGCGATGGACGCTACGACCGCGCCGCCCTCGAC
CAGATCAACTGGCTGATGCGCGACTGGCGCGAGAACGAATCGATCAAAATGGACCCGCGCCTCTTCGACGTGGTGTGGGA
GGCGCAGCGCTCCGTCGGCTCGACCGCGCCGCTGCGCATCGTCTGCGGCTACCGCAGCCCGAAGACCAACGGCATGCTGC
GTCGCCGCTCCTCGGGCGTCGCCGACACCAGCCAGCACATGCTCGGCAAGGCCATGGATTTCTTCATGACCGACGCCTCG
ATCGACCAGATCCGCGCGGTCGGCATGCGGATGCAGCGCGGCGGCGTCGGCTGGTATCCCCGCTCCGGCTCACCCTTCGT
GCATCTCGATGTGGGCTCGGTGCGCTCCTGGCCGCGCATGAGCCACGACCAGCTTGCGCGCCTGTTCCCGGACGGAAAGA
CCGTCCACCTTCCCGCCAACGGCAAGCCGCTCGCCCGCTACGAGGAGGCTCGCGCCGAGATCTTGTCCCGCGGCGGCACG
GTGCTGGGCTACACGGCACTCGCCAGCGCCGACGAGGTTGGCGAGGGGCCGGGGCTCAAGGGCTTCTTCGCCTCGCTCTT
CGGCGGAAACGGCGGGACGGACGCGCCGCCGGCAGCGCTCGCCAGCGCCGCCATGCCGTCCAAGGCTCGGGCCAAGCCGA
GCATCGCGGTCGCCAGCGCCGATCCGGCCGACGGAACCGGGGCGATGGCCTATGCCGCGCCCGCGGCCTCCGAAGCCTTG
CGCGCGACGAGCCTGCGCCGGGACGGCGCCTCGGCGAAGGAATTGCTGACCGGCGAGGCGGATCAGGCGGTGGTCGCACC
GCTGCCGCCGCGGCGTCCCTCGGAATTCGCCGTCGTGGCCACCGCCCTGACCATTCCGCTGCCGCCGCAACGCCCGGTGC
AACTCGCCTCTCTCAACGGTGAGGGCCTGGGCGGCATGGTCCACGTGGCGCAGGCGGTGAGCGAGACGGCCACCGAAGCG
CCTGAACCGGCCATTGTCGAGGCGCGTCTGGTGCCGGCGGATGCCGACCCGCGCGAGCAACTCCGGAGCCTGTTCTTCGC
CGCGGTTCAGGGCGTGTCGGAGCCGGCCGCGCCGACCGCTCTCGTCCGCGTGGCGCTGGCGCGTCCGCGTCCCGACGAAG
CGCTGCCCGCCGAGGCTCTGCACATCCCCTCGGCCGAGGCTCTGAATGGGCGTTTCTCAGCCGAACCTCTCGCGCTGTCC
GCCACCCGCTTCACCGGGTCCGCGACGCAGGGTCCGATGCAGGGCCGTTGA

Upstream 100 bases:

>100_bases
GGTGAGCAGCACGGGCCCCGACGATCCGCCTTTCCGGTCCTCGGTCATCCTTGCGCCTCGCGGCATCGCCGATGCCGCGC
CGTTTCGTGGGGTGAGGACC

Downstream 100 bases:

>100_bases
CGCCTCAGGCGCCCGCGCTCCCTTCCGGGGCATTCAGCCATGGGCGCCGATGCTGCTCGACGAGCACCCGCTTTCCATTC
ACGCCCTTCATCCTGAGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MLRTIRDRLSSNRTSPSPRLKRLASAAGAMAALLVAGTVETQDAVANGDTRSLSMVHEHTGETLNVTFKRDGRYDRAALD
QINWLMRDWRENESIKMDPRLFDVVWEAQRSVGSTAPLRIVCGYRSPKTNGMLRRRSSGVADTSQHMLGKAMDFFMTDAS
IDQIRAVGMRMQRGGVGWYPRSGSPFVHLDVGSVRSWPRMSHDQLARLFPDGKTVHLPANGKPLARYEEARAEILSRGGT
VLGYTALASADEVGEGPGLKGFFASLFGGNGGTDAPPAALASAAMPSKARAKPSIAVASADPADGTGAMAYAAPAASEAL
RATSLRRDGASAKELLTGEADQAVVAPLPPRRPSEFAVVATALTIPLPPQRPVQLASLNGEGLGGMVHVAQAVSETATEA
PEPAIVEARLVPADADPREQLRSLFFAAVQGVSEPAAPTALVRVALARPRPDEALPAEALHIPSAEALNGRFSAEPLALS
ATRFTGSATQGPMQGR

Sequences:

>Translated_496_residues
MLRTIRDRLSSNRTSPSPRLKRLASAAGAMAALLVAGTVETQDAVANGDTRSLSMVHEHTGETLNVTFKRDGRYDRAALD
QINWLMRDWRENESIKMDPRLFDVVWEAQRSVGSTAPLRIVCGYRSPKTNGMLRRRSSGVADTSQHMLGKAMDFFMTDAS
IDQIRAVGMRMQRGGVGWYPRSGSPFVHLDVGSVRSWPRMSHDQLARLFPDGKTVHLPANGKPLARYEEARAEILSRGGT
VLGYTALASADEVGEGPGLKGFFASLFGGNGGTDAPPAALASAAMPSKARAKPSIAVASADPADGTGAMAYAAPAASEAL
RATSLRRDGASAKELLTGEADQAVVAPLPPRRPSEFAVVATALTIPLPPQRPVQLASLNGEGLGGMVHVAQAVSETATEA
PEPAIVEARLVPADADPREQLRSLFFAAVQGVSEPAAPTALVRVALARPRPDEALPAEALHIPSAEALNGRFSAEPLALS
ATRFTGSATQGPMQGR
>Mature_496_residues
MLRTIRDRLSSNRTSPSPRLKRLASAAGAMAALLVAGTVETQDAVANGDTRSLSMVHEHTGETLNVTFKRDGRYDRAALD
QINWLMRDWRENESIKMDPRLFDVVWEAQRSVGSTAPLRIVCGYRSPKTNGMLRRRSSGVADTSQHMLGKAMDFFMTDAS
IDQIRAVGMRMQRGGVGWYPRSGSPFVHLDVGSVRSWPRMSHDQLARLFPDGKTVHLPANGKPLARYEEARAEILSRGGT
VLGYTALASADEVGEGPGLKGFFASLFGGNGGTDAPPAALASAAMPSKARAKPSIAVASADPADGTGAMAYAAPAASEAL
RATSLRRDGASAKELLTGEADQAVVAPLPPRRPSEFAVVATALTIPLPPQRPVQLASLNGEGLGGMVHVAQAVSETATEA
PEPAIVEARLVPADADPREQLRSLFFAAVQGVSEPAAPTALVRVALARPRPDEALPAEALHIPSAEALNGRFSAEPLALS
ATRFTGSATQGPMQGR

Specific function: Unknown

COG id: COG3108

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1666 [H]

Homologues:

Organism=Escherichia coli, GI1787157, Length=148, Percent_Identity=42.5675675675676, Blast_Score=124, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010275
- InterPro:   IPR009045
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05951 Peptidase_M15_2 [H]

EC number: NA

Molecular weight: Translated: 52460; Mature: 52460

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTIRDRLSSNRTSPSPRLKRLASAAGAMAALLVAGTVETQDAVANGDTRSLSMVHEHT
CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHCC
GETLNVTFKRDGRYDRAALDQINWLMRDWRENESIKMDPRLFDVVWEAQRSVGSTAPLRI
CCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHCCCCCCEEE
VCGYRSPKTNGMLRRRSSGVADTSQHMLGKAMDFFMTDASIDQIRAVGMRMQRGGVGWYP
EECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
RSGSPFVHLDVGSVRSWPRMSHDQLARLFPDGKTVHLPANGKPLARYEEARAEILSRGGT
CCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
VLGYTALASADEVGEGPGLKGFFASLFGGNGGTDAPPAALASAAMPSKARAKPSIAVASA
EEEHHHHHCCHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEC
DPADGTGAMAYAAPAASEALRATSLRRDGASAKELLTGEADQAVVAPLPPRRPSEFAVVA
CCCCCCCCEEEECCHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEECCCCCCCCCCEEEEE
TALTIPLPPQRPVQLASLNGEGLGGMVHVAQAVSETATEAPEPAIVEARLVPADADPREQ
EEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHH
LRSLFFAAVQGVSEPAAPTALVRVALARPRPDEALPAEALHIPSAEALNGRFSAEPLALS
HHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHEECCCHHHHCCCCCCCCEEEE
ATRFTGSATQGPMQGR
EEECCCCCCCCCCCCC
>Mature Secondary Structure
MLRTIRDRLSSNRTSPSPRLKRLASAAGAMAALLVAGTVETQDAVANGDTRSLSMVHEHT
CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHCC
GETLNVTFKRDGRYDRAALDQINWLMRDWRENESIKMDPRLFDVVWEAQRSVGSTAPLRI
CCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHCCCCCCEEE
VCGYRSPKTNGMLRRRSSGVADTSQHMLGKAMDFFMTDASIDQIRAVGMRMQRGGVGWYP
EECCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
RSGSPFVHLDVGSVRSWPRMSHDQLARLFPDGKTVHLPANGKPLARYEEARAEILSRGGT
CCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
VLGYTALASADEVGEGPGLKGFFASLFGGNGGTDAPPAALASAAMPSKARAKPSIAVASA
EEEHHHHHCCHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEC
DPADGTGAMAYAAPAASEALRATSLRRDGASAKELLTGEADQAVVAPLPPRRPSEFAVVA
CCCCCCCCEEEECCHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEECCCCCCCCCCEEEEE
TALTIPLPPQRPVQLASLNGEGLGGMVHVAQAVSETATEAPEPAIVEARLVPADADPREQ
EEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHH
LRSLFFAAVQGVSEPAAPTALVRVALARPRPDEALPAEALHIPSAEALNGRFSAEPLALS
HHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHEECCCHHHHCCCCCCCCEEEE
ATRFTGSATQGPMQGR
EEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]