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The map label for this gene is ycbB [H]

Identifier: 218530929

GI number: 218530929

Start: 3141938

End: 3143884

Strand: Reverse

Name: ycbB [H]

Synonym: Mchl_2979

Alternate gene names: 218530929

Gene position: 3143884-3141938 (Counterclockwise)

Preceding gene: 218530930

Following gene: 218530928

Centisome position: 54.41

GC content: 71.29

Gene sequence:

>1947_bases
ATGCGCGCTGCATCGGAAGCCGGAACGGGCATCGCGCGGACCCTGTCCGTTGCGCTGGCGGCCCTCCTCGCTTTCAGCCA
AGCCCCGGCCCGTGCCGAGGAAGCGCCTGCCGCGACGGAGTCCGGCGTCGTTATCCGTAAGGCCGCTGTCGACGTTGCCA
ACGAGCCGGTGGTCACGCCCGACGCCTCCAACGGCGCGGCACCGACCGCCGATGCGCCTGCGCCCCCCGCAGAGCCGGCG
CCCGCGCCCGCGGCCGAAGGGCCACCGGCTCCGGTCGCGCCGAGCGAGCCACTTCCGGCGGCGGTTTATGCGCGCCTCAA
CGACACCGCGCCGCTGCTGCAACGCCTGACTGGCAAGGACCGCGAGGCGATCCAGGCCTTCTACGCGCTCGGCAACTTCA
AGCCGGTCTGGATCGAGAACCGTGCCTTCACTGCCGCCGCCAACGCGGCCATCGCCCGCCTGCGAGAGGCGGGCGAGGAC
GGGCTCGATCCCAATGCCTATCCCGTTCCGGTGGTGGGCAAGCTCAGCCGTCCGGACACGGATGCGGAGATTGCCGAGGC
CGACCTCAAGCTCTCGGCCGCGCTCGCCCTCTACGCCCGCGACGCCCGCAGCGGGCGGGTGAACCCGTCCGCGATCTCGA
GGCTCATCACGCCCACCCTCGACCTGCCGCCGGCCGACACGGTGCTGACCCGTCTCGCCGCTTCGGGAGCGGGAGCCGGC
GACGTACTGCAGAGCTACAATCCGCGCCAGCCCGGCTACCTCGCCCTGAAGAAGCGCCTCGCCGGCCTGCGTGCCGGCCG
GACGCAAGGGGCGCCGAGCGTCAAGCTTCCCGACGGGCCGGTGCTCAAGCTTGGGATGAGCGACCCCCGGGTGCCGTTGC
TGCGCAGCCGCTTCGGTCTCGACGCGAGCGCCGCCGGCACCCTCGATTCGGCGCCCGGCGAGGCGGATGCCTACGACCGC
GCCGTTGCCGATGCCGTTAAGAACTTCCAGCGCAGCCGTGGCCTGCCGGCGAACGGAACGCTCACCCGCGCCACCGTCGC
GGCGCTCGCCAGTTCGAGCGTGCCGAAGACGAGCGCGAGCGAGGCCGACATCCTCGTCAACATGGAGCGCTGGCGCTGGC
TGCCGCCCGAACTCGGACCGAACTACGTCTTCGTGAACGTGCCCGAATTCAAGCTGAAGGTGTTTCGCGACGGGCAGGTG
CGCGACGAAACCCGGGTGATCGTCGGCAAGCCGACGAGCCCGACGCCGACCTTCTCGGGGATGATGGAATACGCCGTCGT
CAACCCGTCCTGGTACGTGCCGCCCTCGATCCTGAAGCAGATGCTGGCCTCGGGCCGCACCGCCGGGTTCGAGGTGGTGC
GCCGGGGCGGCAACATCTCCCTGCGTCAGCCGCCGGGCGAGCGGAACGCGCTTGGCTTCATCAAGTTCATGTTCCCCAAC
CAGCACGCGGTCTACCTGCACGACACGCCGAACCGCTCGCTGTTCTCCGCCTCGACCCGAGCCTTCAGCCACGGCTGCGT
GCGCGTGGACGACCCGTTCCGCTTCGCCGACGCGGTGCTGCCGAGCTGGACGCAGGAGCGCCTCAAGAAGCTGATCGGCA
AGGGCGAGCGGACGCTGCGCCTGCCCGAGAAGCTGCCGGTGCACCTCGCCTACTTCACGGCGGAGGTGGACGATCTCGGC
TCCTACCGCACTCTGCCGGACCTCTATGGCTACGATGGGCCGATGAAGGTCGCGCTGGGGCTCGCCGCCCGCTCGGAGGC
CGTGGCGAAAGCGCCCGCGAAGGAGAGGCGCGCAAGTGCCGAGGCCGCCCGTTCGGCCCCGCGCCAAGCCGTGGCGCGCG
AGGCGGTGCGCAGCGAGCGCCGCGCCCCGCCCCGCCGTTCGTCGGACATGTTCGGCGAGCCGGAGAGCGCCCCCACCTAC
GCTTATCCGCCGCGCAGCTACTGGTAG

Upstream 100 bases:

>100_bases
GCCGCGACATGTGGTCGTGTGGTTGCGCACGGCCGTGCTTCGGTCGATGATCTTTAAGCAGAGCTGCGGCAGTCTCGGCC
GTATCCAGGGAGTTGCCGAC

Downstream 100 bases:

>100_bases
GCCGGCAGTCGCGTTTCACTCCGGATGAGCCATCGACGGCATCCTTCTGCGCGGAACAGCGCGGGGCCGAGATCACGCTT
GAATCTTGCGAGGCACTTTT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 648; Mature: 648

Protein sequence:

>648_residues
MRAASEAGTGIARTLSVALAALLAFSQAPARAEEAPAATESGVVIRKAAVDVANEPVVTPDASNGAAPTADAPAPPAEPA
PAPAAEGPPAPVAPSEPLPAAVYARLNDTAPLLQRLTGKDREAIQAFYALGNFKPVWIENRAFTAAANAAIARLREAGED
GLDPNAYPVPVVGKLSRPDTDAEIAEADLKLSAALALYARDARSGRVNPSAISRLITPTLDLPPADTVLTRLAASGAGAG
DVLQSYNPRQPGYLALKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLDASAAGTLDSAPGEADAYDR
AVADAVKNFQRSRGLPANGTLTRATVAALASSSVPKTSASEADILVNMERWRWLPPELGPNYVFVNVPEFKLKVFRDGQV
RDETRVIVGKPTSPTPTFSGMMEYAVVNPSWYVPPSILKQMLASGRTAGFEVVRRGGNISLRQPPGERNALGFIKFMFPN
QHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVLPSWTQERLKKLIGKGERTLRLPEKLPVHLAYFTAEVDDLG
SYRTLPDLYGYDGPMKVALGLAARSEAVAKAPAKERRASAEAARSAPRQAVAREAVRSERRAPPRRSSDMFGEPESAPTY
AYPPRSYW

Sequences:

>Translated_648_residues
MRAASEAGTGIARTLSVALAALLAFSQAPARAEEAPAATESGVVIRKAAVDVANEPVVTPDASNGAAPTADAPAPPAEPA
PAPAAEGPPAPVAPSEPLPAAVYARLNDTAPLLQRLTGKDREAIQAFYALGNFKPVWIENRAFTAAANAAIARLREAGED
GLDPNAYPVPVVGKLSRPDTDAEIAEADLKLSAALALYARDARSGRVNPSAISRLITPTLDLPPADTVLTRLAASGAGAG
DVLQSYNPRQPGYLALKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLDASAAGTLDSAPGEADAYDR
AVADAVKNFQRSRGLPANGTLTRATVAALASSSVPKTSASEADILVNMERWRWLPPELGPNYVFVNVPEFKLKVFRDGQV
RDETRVIVGKPTSPTPTFSGMMEYAVVNPSWYVPPSILKQMLASGRTAGFEVVRRGGNISLRQPPGERNALGFIKFMFPN
QHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVLPSWTQERLKKLIGKGERTLRLPEKLPVHLAYFTAEVDDLG
SYRTLPDLYGYDGPMKVALGLAARSEAVAKAPAKERRASAEAARSAPRQAVAREAVRSERRAPPRRSSDMFGEPESAPTY
AYPPRSYW
>Mature_648_residues
MRAASEAGTGIARTLSVALAALLAFSQAPARAEEAPAATESGVVIRKAAVDVANEPVVTPDASNGAAPTADAPAPPAEPA
PAPAAEGPPAPVAPSEPLPAAVYARLNDTAPLLQRLTGKDREAIQAFYALGNFKPVWIENRAFTAAANAAIARLREAGED
GLDPNAYPVPVVGKLSRPDTDAEIAEADLKLSAALALYARDARSGRVNPSAISRLITPTLDLPPADTVLTRLAASGAGAG
DVLQSYNPRQPGYLALKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLDASAAGTLDSAPGEADAYDR
AVADAVKNFQRSRGLPANGTLTRATVAALASSSVPKTSASEADILVNMERWRWLPPELGPNYVFVNVPEFKLKVFRDGQV
RDETRVIVGKPTSPTPTFSGMMEYAVVNPSWYVPPSILKQMLASGRTAGFEVVRRGGNISLRQPPGERNALGFIKFMFPN
QHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVLPSWTQERLKKLIGKGERTLRLPEKLPVHLAYFTAEVDDLG
SYRTLPDLYGYDGPMKVALGLAARSEAVAKAPAKERRASAEAARSAPRQAVAREAVRSERRAPPRRSSDMFGEPESAPTY
AYPPRSYW

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=364, Percent_Identity=32.4175824175824, Blast_Score=161, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 69021; Mature: 69021

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAASEAGTGIARTLSVALAALLAFSQAPARAEEAPAATESGVVIRKAAVDVANEPVVTP
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEHHHHHCCCCEECC
DASNGAAPTADAPAPPAEPAPAPAAEGPPAPVAPSEPLPAAVYARLNDTAPLLQRLTGKD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCC
REAIQAFYALGNFKPVWIENRAFTAAANAAIARLREAGEDGLDPNAYPVPVVGKLSRPDT
HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCC
DAEIAEADLKLSAALALYARDARSGRVNPSAISRLITPTLDLPPADTVLTRLAASGAGAG
CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHH
DVLQSYNPRQPGYLALKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGL
HHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCEEEECCCCCCCHHHHHHCCC
DASAAGTLDSAPGEADAYDRAVADAVKNFQRSRGLPANGTLTRATVAALASSSVPKTSAS
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCC
EADILVNMERWRWLPPELGPNYVFVNVPEFKLKVFRDGQVRDETRVIVGKPTSPTPTFSG
CCEEEEEHHHCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHH
MMEYAVVNPSWYVPPSILKQMLASGRTAGFEVVRRGGNISLRQPPGERNALGFIKFMFPN
HEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCCCCCEEEEEEECCC
QHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVLPSWTQERLKKLIGKGERTLR
CEEEEEECCCCCCHHHHHHHHHHCCEEEECCCHHHHHHHCCHHHHHHHHHHHCCCCCEEE
LPEKLPVHLAYFTAEVDDLGSYRTLPDLYGYDGPMKVALGLAARSEAVAKAPAKERRASA
CCCCCCEEEEEEEEEHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
EAARSAPRQAVAREAVRSERRAPPRRSSDMFGEPESAPTYAYPPRSYW
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRAASEAGTGIARTLSVALAALLAFSQAPARAEEAPAATESGVVIRKAAVDVANEPVVTP
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEHHHHHCCCCEECC
DASNGAAPTADAPAPPAEPAPAPAAEGPPAPVAPSEPLPAAVYARLNDTAPLLQRLTGKD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCC
REAIQAFYALGNFKPVWIENRAFTAAANAAIARLREAGEDGLDPNAYPVPVVGKLSRPDT
HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCC
DAEIAEADLKLSAALALYARDARSGRVNPSAISRLITPTLDLPPADTVLTRLAASGAGAG
CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHH
DVLQSYNPRQPGYLALKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGL
HHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCEEEECCCCCCCHHHHHHCCC
DASAAGTLDSAPGEADAYDRAVADAVKNFQRSRGLPANGTLTRATVAALASSSVPKTSAS
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCC
EADILVNMERWRWLPPELGPNYVFVNVPEFKLKVFRDGQVRDETRVIVGKPTSPTPTFSG
CCEEEEEHHHCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHH
MMEYAVVNPSWYVPPSILKQMLASGRTAGFEVVRRGGNISLRQPPGERNALGFIKFMFPN
HEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCCCCCEEEEEEECCC
QHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVLPSWTQERLKKLIGKGERTLR
CEEEEEECCCCCCHHHHHHHHHHCCEEEECCCHHHHHHHCCHHHHHHHHHHHCCCCCEEE
LPEKLPVHLAYFTAEVDDLGSYRTLPDLYGYDGPMKVALGLAARSEAVAKAPAKERRASA
CCCCCCEEEEEEEEEHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
EAARSAPRQAVAREAVRSERRAPPRRSSDMFGEPESAPTYAYPPRSYW
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]