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The map label for this gene is ydhB [H]

Identifier: 218711019

GI number: 218711019

Start: 3283889

End: 3284803

Strand: Reverse

Name: ydhB [H]

Synonym: VS_3148

Alternate gene names: 218711019

Gene position: 3284803-3283889 (Counterclockwise)

Preceding gene: 218711021

Following gene: 218711013

Centisome position: 99.56

GC content: 47.32

Gene sequence:

>915_bases
ATGTTCTCTAAATCTTCTTTAGAAATGCTCGATACTGTTGCTCGCTTAGGCAGTTTTACTGCGGCGGCAGAACAATTGCA
CAAAGTGCCCTCAGCGATCAGCTATGGGGTTAGGCAGGTAGAGCAAGAGCTTGATGTTCTACTTTTCAGACGGTTACCAA
GAAAAGTAGAGCTGACACCTGCAGGTGAGTTGTTTATTGAAGAGGCTCGTCAACTGCTGAGACAGATGGAAGAACTCAGT
GCCCAGACTCGCCGAGCTGCGCGTGGTTGGAAGAAAACCTTGCGCTTAACGCTTGATAACGTGGTTAAGCTCGACAAGAT
GAAGCCTATGATTGAAGAGTTTTATCAAACCTTTGAGTTCGCTGAGCTGCAGATTAACATGGAAGTGTTTAACGGCTCTT
GGGAAGCCATTGCACAGGGCAGGGCGGATGTCGTGATTGGTGCAACCTCGGCGATTCCGGTTGGTGGTGACTTTGAAGTT
AAGGATATGGGGCGGTTAGATTGGGCATTTGTGATGTCACCCAGTCACCCGTGTGTGCGAGAGCAAAACCTTAATGAAGC
CTTTGTCAGTCAATACCCAGCAATATGTTTGGATGATACCTCCAGCGTGCTGCCTAAGCGTCACACTGGCCATTATGCAA
GTCAGAGACGTCTACTATTGCCTAATTGGTACAGCGCAATAGAATGCCTTAAAAATGGTGTAGGGGTGGGTTACATGCCA
AGGCATATCGCCGCACCTATTATTGAGCAAGGTTTGCTGGTAGAAAAAATATTACCTGAGCCAAGCCCGCAGAGTCATTG
CTGCTTAGTGTGGCGTAAAGACGACAACCATAAGTTGATCGAGTGGATGGTTAAGTATTTAGGATCGAGTGAACAGCTTC
ACCAAGATTGGTTGGATCATCGCAAGGCGATCTAA

Upstream 100 bases:

>100_bases
AGTGAAAGCCCCTGTTTATTTGTGCTGACATTCTATTTTTCAGACCTGATAAAATAAAACGCTAAAATATGTGGTTATCA
ATCAAAAAATTTGAAGGCTT

Downstream 100 bases:

>100_bases
TGATCTATTTACAAGAAGATCCTTTTCAAGCTTGAACTGAATCAGCACCAATAAAAAGAGCGAGTAAATACTCGCTCTTT
TTTGATTCGGTCGTTAACTC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MFSKSSLEMLDTVARLGSFTAAAEQLHKVPSAISYGVRQVEQELDVLLFRRLPRKVELTPAGELFIEEARQLLRQMEELS
AQTRRAARGWKKTLRLTLDNVVKLDKMKPMIEEFYQTFEFAELQINMEVFNGSWEAIAQGRADVVIGATSAIPVGGDFEV
KDMGRLDWAFVMSPSHPCVREQNLNEAFVSQYPAICLDDTSSVLPKRHTGHYASQRRLLLPNWYSAIECLKNGVGVGYMP
RHIAAPIIEQGLLVEKILPEPSPQSHCCLVWRKDDNHKLIEWMVKYLGSSEQLHQDWLDHRKAI

Sequences:

>Translated_304_residues
MFSKSSLEMLDTVARLGSFTAAAEQLHKVPSAISYGVRQVEQELDVLLFRRLPRKVELTPAGELFIEEARQLLRQMEELS
AQTRRAARGWKKTLRLTLDNVVKLDKMKPMIEEFYQTFEFAELQINMEVFNGSWEAIAQGRADVVIGATSAIPVGGDFEV
KDMGRLDWAFVMSPSHPCVREQNLNEAFVSQYPAICLDDTSSVLPKRHTGHYASQRRLLLPNWYSAIECLKNGVGVGYMP
RHIAAPIIEQGLLVEKILPEPSPQSHCCLVWRKDDNHKLIEWMVKYLGSSEQLHQDWLDHRKAI
>Mature_304_residues
MFSKSSLEMLDTVARLGSFTAAAEQLHKVPSAISYGVRQVEQELDVLLFRRLPRKVELTPAGELFIEEARQLLRQMEELS
AQTRRAARGWKKTLRLTLDNVVKLDKMKPMIEEFYQTFEFAELQINMEVFNGSWEAIAQGRADVVIGATSAIPVGGDFEV
KDMGRLDWAFVMSPSHPCVREQNLNEAFVSQYPAICLDDTSSVLPKRHTGHYASQRRLLLPNWYSAIECLKNGVGVGYMP
RHIAAPIIEQGLLVEKILPEPSPQSHCCLVWRKDDNHKLIEWMVKYLGSSEQLHQDWLDHRKAI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=299, Percent_Identity=42.1404682274247, Blast_Score=267, Evalue=5e-73,
Organism=Escherichia coli, GI87082024, Length=251, Percent_Identity=31.8725099601594, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1786508, Length=307, Percent_Identity=28.3387622149837, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1786713, Length=286, Percent_Identity=27.972027972028, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1789492, Length=281, Percent_Identity=29.8932384341637, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1790262, Length=264, Percent_Identity=26.1363636363636, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789506, Length=207, Percent_Identity=24.6376811594203, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34675; Mature: 34675

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSKSSLEMLDTVARLGSFTAAAEQLHKVPSAISYGVRQVEQELDVLLFRRLPRKVELTP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
AGELFIEEARQLLRQMEELSAQTRRAARGWKKTLRLTLDNVVKLDKMKPMIEEFYQTFEF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELQINMEVFNGSWEAIAQGRADVVIGATSAIPVGGDFEVKDMGRLDWAFVMSPSHPCVR
HHEEEEEEEECCCHHHHHCCCCCEEEECCCCCCCCCCCCHHHCCCCCEEEEECCCCCCHH
EQNLNEAFVSQYPAICLDDTSSVLPKRHTGHYASQRRLLLPNWYSAIECLKNGVGVGYMP
HCCCCHHHHHHCCCEEECCCHHHCCCCCCCCHHHCCCEECCCHHHHHHHHHCCCCCCCCH
RHIAAPIIEQGLLVEKILPEPSPQSHCCLVWRKDDNHKLIEWMVKYLGSSEQLHQDWLDH
HHHHHHHHHHCHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHH
RKAI
HCCC
>Mature Secondary Structure
MFSKSSLEMLDTVARLGSFTAAAEQLHKVPSAISYGVRQVEQELDVLLFRRLPRKVELTP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
AGELFIEEARQLLRQMEELSAQTRRAARGWKKTLRLTLDNVVKLDKMKPMIEEFYQTFEF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELQINMEVFNGSWEAIAQGRADVVIGATSAIPVGGDFEVKDMGRLDWAFVMSPSHPCVR
HHEEEEEEEECCCHHHHHCCCCCEEEECCCCCCCCCCCCHHHCCCCCEEEEECCCCCCHH
EQNLNEAFVSQYPAICLDDTSSVLPKRHTGHYASQRRLLLPNWYSAIECLKNGVGVGYMP
HCCCCHHHHHHCCCEEECCCHHHCCCCCCCCHHHCCCEECCCHHHHHHHHHCCCCCCCCH
RHIAAPIIEQGLLVEKILPEPSPQSHCCLVWRKDDNHKLIEWMVKYLGSSEQLHQDWLDH
HHHHHHHHHHCHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHH
RKAI
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]