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The map label for this gene is yidZ [H]

Identifier: 218710977

GI number: 218710977

Start: 3235263

End: 3236204

Strand: Direct

Name: yidZ [H]

Synonym: VS_3091

Alternate gene names: 218710977

Gene position: 3235263-3236204 (Clockwise)

Preceding gene: 218710974

Following gene: 218710978

Centisome position: 98.06

GC content: 48.41

Gene sequence:

>942_bases
ATGAATATTGAGAAACTATCACGCCTCGACTTAAACCTACTGGTTTGCTTACAAGTGCTGATGGAAGAGCTAAGCGTCAC
GCGCACCGCACATCGATTGTGCCTGAGCCAATCGGCTGTGAGTAAGTCATTAGCCAAGCTTCGCGAACAATTTAATGACC
CTCTTTTCACGCGAAGTGCGCATGGCCTGCGGCCAACACCGAAAGCGGTTTTCCTTAAGCCTCGCTTAGAAACGTTGATC
AACCAACTTGATGTGCTTACTCAGCCTGAGACATTCATTCCCAATAACAGCGACCACAGCTTTCACATCGCTGCCGTTGA
GAGTGTTTACCCGCTGATTCTTCCTCACTTCTTACCGGCGATATTTCGACAAGCACCTAAGGTCAATATCAACACCCACG
CGTGGACCGAACAAACCTTTAAGAAGCTACAGCTTGGTGAGTTAGATATCGGACTCACAGGCAAAGACATCGACATCAAC
GACGCGCGCTTAACTATGCTGCCGCCAGACGATATCTGCGAACAAGAGATCTATCGCGATGCACAAATGTGTGTGTTAAG
ACGCAACCACCCTGCTCTGAGTGGCAAATGGGATCTAGAAACCTACCTCGCCCAGCGTCATGTACAAGTAAGATGCGATG
GTAACGACCGTTGGCTGCTCGATTACAAACTTGCCGACCTTGGGCATCAACGTGATATCGCAATCTCAGTACCGGACTTC
AATAGCGCTGCTAGCCTGTGTACCTATACCGATTTTGTCTTTACCGCACCAAGCCACTTTACTTACCTCGTCGCCAAACA
ACTCGACTTAGTGGTTGTGCCTTTACCAATGGAATTCCCGCCGATGGCATACACTCTGTTTTGGCACCGTGACAGAGAAA
ATGACCCAGCGCTAACTTGGTTGCGAGATATCATCAAAGAAAAAACTCTGCACCTTAGATAA

Upstream 100 bases:

>100_bases
AGATTCTCCGAATGAGTTAATTTAGGTGCATAATAACCAACTAAAGATATGAACAAAAATGGCATATACTCATTAGCATT
ATTCCAAATAGGAAACTCAC

Downstream 100 bases:

>100_bases
AAATGGCGTACAGCGTTTGCAGCAAACGAACAAAAGCGCTAGCTTATTGACCTAATAAGTCCCCTCGCATGTATATCGAC
TGTGAGTGTTAACAAGGACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNIEKLSRLDLNLLVCLQVLMEELSVTRTAHRLCLSQSAVSKSLAKLREQFNDPLFTRSAHGLRPTPKAVFLKPRLETLI
NQLDVLTQPETFIPNNSDHSFHIAAVESVYPLILPHFLPAIFRQAPKVNINTHAWTEQTFKKLQLGELDIGLTGKDIDIN
DARLTMLPPDDICEQEIYRDAQMCVLRRNHPALSGKWDLETYLAQRHVQVRCDGNDRWLLDYKLADLGHQRDIAISVPDF
NSAASLCTYTDFVFTAPSHFTYLVAKQLDLVVVPLPMEFPPMAYTLFWHRDRENDPALTWLRDIIKEKTLHLR

Sequences:

>Translated_313_residues
MNIEKLSRLDLNLLVCLQVLMEELSVTRTAHRLCLSQSAVSKSLAKLREQFNDPLFTRSAHGLRPTPKAVFLKPRLETLI
NQLDVLTQPETFIPNNSDHSFHIAAVESVYPLILPHFLPAIFRQAPKVNINTHAWTEQTFKKLQLGELDIGLTGKDIDIN
DARLTMLPPDDICEQEIYRDAQMCVLRRNHPALSGKWDLETYLAQRHVQVRCDGNDRWLLDYKLADLGHQRDIAISVPDF
NSAASLCTYTDFVFTAPSHFTYLVAKQLDLVVVPLPMEFPPMAYTLFWHRDRENDPALTWLRDIIKEKTLHLR
>Mature_313_residues
MNIEKLSRLDLNLLVCLQVLMEELSVTRTAHRLCLSQSAVSKSLAKLREQFNDPLFTRSAHGLRPTPKAVFLKPRLETLI
NQLDVLTQPETFIPNNSDHSFHIAAVESVYPLILPHFLPAIFRQAPKVNINTHAWTEQTFKKLQLGELDIGLTGKDIDIN
DARLTMLPPDDICEQEIYRDAQMCVLRRNHPALSGKWDLETYLAQRHVQVRCDGNDRWLLDYKLADLGHQRDIAISVPDF
NSAASLCTYTDFVFTAPSHFTYLVAKQLDLVVVPLPMEFPPMAYTLFWHRDRENDPALTWLRDIIKEKTLHLR

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=298, Percent_Identity=33.5570469798658, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI87081684, Length=304, Percent_Identity=25.6578947368421, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI87081766, Length=306, Percent_Identity=23.8562091503268, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786820, Length=76, Percent_Identity=46.0526315789474, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36017; Mature: 36017

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIEKLSRLDLNLLVCLQVLMEELSVTRTAHRLCLSQSAVSKSLAKLREQFNDPLFTRSA
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
HGLRPTPKAVFLKPRLETLINQLDVLTQPETFIPNNSDHSFHIAAVESVYPLILPHFLPA
CCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
IFRQAPKVNINTHAWTEQTFKKLQLGELDIGLTGKDIDINDARLTMLPPDDICEQEIYRD
HHHCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHH
AQMCVLRRNHPALSGKWDLETYLAQRHVQVRCDGNDRWLLDYKLADLGHQRDIAISVPDF
HHHHHEECCCCCCCCCCHHHHHHHCCEEEEEECCCCEEEEEEEHHCCCCCCCEEEECCCC
NSAASLCTYTDFVFTAPSHFTYLVAKQLDLVVVPLPMEFPPMAYTLFWHRDRENDPALTW
CCHHHHHHHHHHEEECCCHHHHHEECCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHH
LRDIIKEKTLHLR
HHHHHHHHHCCCC
>Mature Secondary Structure
MNIEKLSRLDLNLLVCLQVLMEELSVTRTAHRLCLSQSAVSKSLAKLREQFNDPLFTRSA
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
HGLRPTPKAVFLKPRLETLINQLDVLTQPETFIPNNSDHSFHIAAVESVYPLILPHFLPA
CCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
IFRQAPKVNINTHAWTEQTFKKLQLGELDIGLTGKDIDINDARLTMLPPDDICEQEIYRD
HHHCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHH
AQMCVLRRNHPALSGKWDLETYLAQRHVQVRCDGNDRWLLDYKLADLGHQRDIAISVPDF
HHHHHEECCCCCCCCCCHHHHHHHCCEEEEEECCCCEEEEEEEHHCCCCCCCEEEECCCC
NSAASLCTYTDFVFTAPSHFTYLVAKQLDLVVVPLPMEFPPMAYTLFWHRDRENDPALTW
CCHHHHHHHHHHEEECCCHHHHHEECCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHH
LRDIIKEKTLHLR
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA